Variant report

Variant	rs10149912
Chromosome Location	chr14:56571116-56571117
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10138745	0.95[ASN][1000 genomes]
rs10483664	0.91[ASN][1000 genomes]
rs11158073	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158074	0.93[ASN][1000 genomes]
rs11158075	0.93[ASN][1000 genomes]
rs1157501	0.93[ASN][1000 genomes]
rs11846023	0.95[ASN][1000 genomes]
rs1383395	0.91[ASN][1000 genomes]
rs1480647	0.93[ASN][1000 genomes]
rs1480648	0.93[ASN][1000 genomes]
rs1480649	0.93[ASN][1000 genomes]
rs1480651	0.93[ASN][1000 genomes]
rs1480653	0.93[ASN][1000 genomes]
rs1480654	0.93[ASN][1000 genomes]
rs1480655	0.93[ASN][1000 genomes]
rs1480656	0.93[ASN][1000 genomes]
rs17090922	0.92[CHB][hapmap];0.82[CHD][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs17090962	0.91[ASN][1000 genomes]
rs17090964	0.91[ASN][1000 genomes]
rs17090970	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17090982	0.93[ASN][1000 genomes]
rs17090986	0.93[ASN][1000 genomes]
rs17090998	0.93[ASN][1000 genomes]
rs17091004	0.93[ASN][1000 genomes]
rs17091006	0.93[ASN][1000 genomes]
rs17091008	0.93[ASN][1000 genomes]
rs17091010	0.93[ASN][1000 genomes]
rs1951954	0.93[ASN][1000 genomes]
rs1957889	0.93[ASN][1000 genomes]
rs28580335	0.93[ASN][1000 genomes]
rs3742572	0.99[ASN][1000 genomes]
rs4628882	0.93[ASN][1000 genomes]
rs55678499	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55941817	0.93[ASN][1000 genomes]
rs56196615	0.93[ASN][1000 genomes]
rs57016870	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57186216	1.00[ASN][1000 genomes]
rs57701314	0.91[ASN][1000 genomes]
rs58507155	0.93[ASN][1000 genomes]
rs59328971	0.91[ASN][1000 genomes]
rs59357371	0.89[ASN][1000 genomes]
rs59905171	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61317680	0.90[ASN][1000 genomes]
rs61544265	0.93[ASN][1000 genomes]
rs7140378	0.92[ASN][1000 genomes]
rs7142629	0.93[ASN][1000 genomes]
rs7142937	0.93[ASN][1000 genomes]
rs7144227	0.93[ASN][1000 genomes]
rs7144527	0.93[ASN][1000 genomes]
rs7144901	0.93[ASN][1000 genomes]
rs7145187	0.93[ASN][1000 genomes]
rs7145439	0.93[ASN][1000 genomes]
rs7146538	0.93[ASN][1000 genomes]
rs7153447	0.93[ASN][1000 genomes]
rs7153608	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7154407	0.93[ASN][1000 genomes]
rs7158199	0.93[ASN][1000 genomes]
rs7158316	0.93[ASN][1000 genomes]
rs7159040	0.93[ASN][1000 genomes]
rs7159290	0.93[ASN][1000 genomes]
rs7159691	0.93[ASN][1000 genomes]
rs7160120	0.91[ASN][1000 genomes]
rs7160744	0.93[ASN][1000 genomes]
rs73287042	0.91[ASN][1000 genomes]
rs73287091	0.93[ASN][1000 genomes]
rs73287092	0.93[ASN][1000 genomes]
rs73287099	0.93[ASN][1000 genomes]
rs73288913	0.93[ASN][1000 genomes]
rs8004314	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.85[TSI][hapmap];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8005783	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8006589	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8007444	0.93[ASN][1000 genomes]
rs8008108	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8012389	0.93[ASN][1000 genomes]
rs8014415	0.93[ASN][1000 genomes]
rs8014498	0.93[ASN][1000 genomes]
rs8017757	0.91[ASN][1000 genomes]
rs8018839	0.93[ASN][1000 genomes]
rs8019044	0.91[ASN][1000 genomes]
rs8019252	0.93[ASN][1000 genomes]
rs8022898	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533129	chr14:56568535-56819234	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56566600-56572000	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr14:56570600-56571200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:56571000-56571200	Enhancers	Pancreas	Pancrea
4	chr14:56571000-56572800	Weak transcription	Primary monocytes fromperipheralblood	blood

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