Variant report

Variant	rs56196615
Chromosome Location	chr14:56560589-56560590
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:56557295..56559117-chr14:56559482..56561735,2	K562	blood:

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10138745	0.89[ASN][1000 genomes]
rs10149912	0.93[ASN][1000 genomes]
rs10483664	0.98[ASN][1000 genomes]
rs11158073	0.93[ASN][1000 genomes]
rs11158074	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158075	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1157501	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11846023	0.91[ASN][1000 genomes]
rs1383395	0.98[ASN][1000 genomes]
rs1480647	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1480648	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1480649	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1480651	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1480653	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1480654	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1480655	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1480656	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17090922	0.81[ASN][1000 genomes]
rs17090962	0.98[ASN][1000 genomes]
rs17090964	0.98[ASN][1000 genomes]
rs17090970	0.89[ASN][1000 genomes]
rs17090982	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17090986	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17090998	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17091004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17091006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17091008	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17091010	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1812362	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1951954	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1957889	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28580335	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3742572	0.92[ASN][1000 genomes]
rs4628882	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55678499	0.93[ASN][1000 genomes]
rs55941817	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57016870	0.93[ASN][1000 genomes]
rs57186216	0.93[ASN][1000 genomes]
rs57701314	0.98[ASN][1000 genomes]
rs58507155	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59328971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59357371	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59905171	0.93[ASN][1000 genomes]
rs61317680	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61544265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7140378	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7142629	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7142937	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7144227	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7144527	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7144901	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7145187	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7145439	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7146538	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7153447	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7153608	0.93[ASN][1000 genomes]
rs7154407	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7158199	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7158316	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7159040	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7159290	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7159691	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7160120	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7160744	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73287042	0.98[ASN][1000 genomes]
rs73287091	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73287092	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73287099	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73288913	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8004314	0.90[ASN][1000 genomes]
rs8005783	0.91[ASN][1000 genomes]
rs8006589	0.93[ASN][1000 genomes]
rs8007444	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8008108	0.93[ASN][1000 genomes]
rs8012389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8014415	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8014498	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8017757	0.98[ASN][1000 genomes]
rs8018839	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8019044	0.98[ASN][1000 genomes]
rs8019252	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8022898	0.90[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56555200-56563600	Weak transcription	Pancreas	Pancrea
2	chr14:56556200-56565800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr14:56557000-56560800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr14:56557800-56563800	Weak transcription	Fetal Brain Female	brain
5	chr14:56558000-56563600	Weak transcription	Fetal Brain Male	brain
6	chr14:56558200-56562200	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr14:56558800-56561800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr14:56559000-56561600	Enhancers	Fetal Intestine Large	intestine
9	chr14:56559400-56560600	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr14:56559400-56561000	Enhancers	H9 Cell Line	embryonic stem cell
11	chr14:56559400-56561200	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr14:56559600-56560800	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr14:56559600-56561000	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr14:56559800-56561800	Enhancers	Fetal Lung	lung
15	chr14:56560000-56561200	Enhancers	Primary B cells from cord blood	blood
16	chr14:56560400-56560600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
17	chr14:56560400-56560800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr14:56560400-56561000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr14:56560400-56561200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr14:56560400-56561400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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