Variant report

Variant	rs1480651
Chromosome Location	chr14:56570572-56570573
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10138745	0.89[ASN][1000 genomes]
rs10149912	0.93[ASN][1000 genomes]
rs1041076	0.89[AFR][1000 genomes]
rs10483664	0.98[ASN][1000 genomes]
rs11158073	0.93[ASN][1000 genomes]
rs11158074	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158075	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1157501	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11846023	0.91[ASN][1000 genomes]
rs1383395	0.98[ASN][1000 genomes]
rs1480647	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1480648	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1480649	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1480653	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1480654	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1480655	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1480656	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17090922	0.92[CHB][hapmap];0.81[ASN][1000 genomes]
rs17090962	0.98[ASN][1000 genomes]
rs17090964	0.98[ASN][1000 genomes]
rs17090970	0.89[ASN][1000 genomes]
rs17090982	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17090986	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17090998	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17091004	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17091006	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17091008	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17091010	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1812362	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1951954	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1957889	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28580335	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3742572	0.92[ASN][1000 genomes]
rs4628882	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55678499	0.93[ASN][1000 genomes]
rs55941817	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56196615	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57016870	0.93[ASN][1000 genomes]
rs57186216	0.93[ASN][1000 genomes]
rs57701314	0.98[ASN][1000 genomes]
rs58507155	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59328971	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59357371	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59905171	0.93[ASN][1000 genomes]
rs61317680	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61544265	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7140378	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7142629	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7142937	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7144227	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7144527	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7144901	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7145187	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7145439	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7146538	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7153447	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7153608	0.93[ASN][1000 genomes]
rs7154407	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7158199	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7158316	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7159040	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7159290	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7159691	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7160120	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7160744	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73287042	0.98[ASN][1000 genomes]
rs73287091	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73287092	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73287099	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73288913	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8004314	1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs8005783	0.91[ASN][1000 genomes]
rs8006589	0.93[ASN][1000 genomes]
rs8007444	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8008108	0.93[ASN][1000 genomes]
rs8012389	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8014415	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8014498	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8017757	0.98[ASN][1000 genomes]
rs8018839	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8019044	0.98[ASN][1000 genomes]
rs8019252	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8022898	1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533129	chr14:56568535-56819234	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56566000-56570600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:56566600-56572000	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr14:56569400-56571000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr14:56570400-56570600	Enhancers	Fetal Kidney	kidney
5	chr14:56570400-56571000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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