Variant report

Variant	rs61317680
Chromosome Location	chr14:56556168-56556169
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10138745	0.86[ASN][1000 genomes]
rs10149912	0.90[ASN][1000 genomes]
rs10483664	0.94[ASN][1000 genomes]
rs11158073	0.90[ASN][1000 genomes]
rs11158074	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11158075	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1157501	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11846023	0.88[ASN][1000 genomes]
rs1383395	0.94[ASN][1000 genomes]
rs1480647	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1480648	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1480649	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1480651	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1480653	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1480654	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1480655	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1480656	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17090962	0.94[ASN][1000 genomes]
rs17090964	0.94[ASN][1000 genomes]
rs17090970	0.86[ASN][1000 genomes]
rs17090982	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17090986	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17090998	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17091004	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17091006	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17091008	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17091010	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1812362	0.96[EUR][1000 genomes]
rs1951954	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1957889	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28580335	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3742572	0.89[ASN][1000 genomes]
rs4628882	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55678499	0.90[ASN][1000 genomes]
rs55941817	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56196615	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57016870	0.90[ASN][1000 genomes]
rs57186216	0.90[ASN][1000 genomes]
rs57701314	0.94[ASN][1000 genomes]
rs58507155	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59328971	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59357371	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59905171	0.90[ASN][1000 genomes]
rs61544265	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7140378	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7142629	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7142937	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7144227	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7144527	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7144901	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7145187	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7145439	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7146538	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7153447	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7153608	0.90[ASN][1000 genomes]
rs7154407	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7158199	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7158316	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7159040	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7159290	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7159691	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7160120	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7160744	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73287042	0.94[ASN][1000 genomes]
rs73287091	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73287092	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73287099	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73288913	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8004314	0.87[ASN][1000 genomes]
rs8005783	0.88[ASN][1000 genomes]
rs8006589	0.90[ASN][1000 genomes]
rs8007444	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8008108	0.90[ASN][1000 genomes]
rs8012389	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8014415	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8014498	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8017757	0.94[ASN][1000 genomes]
rs8018839	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8019044	0.94[ASN][1000 genomes]
rs8019252	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8022898	0.87[ASN][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56553800-56559400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:56554000-56556200	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr14:56554000-56556200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr14:56554000-56556200	Enhancers	Fetal Lung	lung
5	chr14:56554000-56556200	Enhancers	Fetal Stomach	stomach
6	chr14:56554000-56556200	Enhancers	Rectal Smooth Muscle	rectum
7	chr14:56554000-56556400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr14:56554000-56557000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr14:56554000-56558000	Enhancers	Fetal Brain Male	brain
10	chr14:56554200-56557000	Enhancers	Brain Germinal Matrix	brain
11	chr14:56554400-56556200	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr14:56554400-56556600	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr14:56554600-56556200	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr14:56554600-56556200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr14:56554600-56556200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr14:56554600-56556400	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr14:56554800-56556600	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr14:56555000-56557000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr14:56555000-56559400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr14:56555200-56556200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
21	chr14:56555200-56559400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr14:56555200-56563600	Weak transcription	Pancreas	Pancrea
23	chr14:56555600-56556200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr14:56555600-56559800	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr14:56555600-56560400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr14:56555800-56557800	Enhancers	Fetal Brain Female	brain
27	chr14:56556000-56556200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr14:56556000-56559400	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr14:56556000-56559600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr14:56556000-56560400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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