Variant report
Variant | rs57016870 |
---|---|
Chromosome Location | chr14:56580191-56580192 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10138745 | 0.95[ASN][1000 genomes] |
rs10149912 | 0.87[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10483664 | 0.91[ASN][1000 genomes] |
rs11158073 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11158074 | 0.93[ASN][1000 genomes] |
rs11158075 | 0.93[ASN][1000 genomes] |
rs1157501 | 0.93[ASN][1000 genomes] |
rs11846023 | 0.95[ASN][1000 genomes] |
rs1383395 | 0.91[ASN][1000 genomes] |
rs1480647 | 0.93[ASN][1000 genomes] |
rs1480648 | 0.93[ASN][1000 genomes] |
rs1480649 | 0.93[ASN][1000 genomes] |
rs1480651 | 0.93[ASN][1000 genomes] |
rs1480653 | 0.93[ASN][1000 genomes] |
rs1480654 | 0.93[ASN][1000 genomes] |
rs1480655 | 0.93[ASN][1000 genomes] |
rs1480656 | 0.93[ASN][1000 genomes] |
rs17090922 | 0.85[ASN][1000 genomes] |
rs17090962 | 0.91[ASN][1000 genomes] |
rs17090964 | 0.91[ASN][1000 genomes] |
rs17090970 | 0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs17090982 | 0.93[ASN][1000 genomes] |
rs17090986 | 0.93[ASN][1000 genomes] |
rs17090998 | 0.93[ASN][1000 genomes] |
rs17091004 | 0.93[ASN][1000 genomes] |
rs17091006 | 0.93[ASN][1000 genomes] |
rs17091008 | 0.93[ASN][1000 genomes] |
rs17091010 | 0.93[ASN][1000 genomes] |
rs1951954 | 0.93[ASN][1000 genomes] |
rs1957889 | 0.93[ASN][1000 genomes] |
rs28580335 | 0.93[ASN][1000 genomes] |
rs3742572 | 0.99[ASN][1000 genomes] |
rs4628882 | 0.93[ASN][1000 genomes] |
rs55678499 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs55941817 | 0.93[ASN][1000 genomes] |
rs56196615 | 0.93[ASN][1000 genomes] |
rs57186216 | 1.00[ASN][1000 genomes] |
rs57701314 | 0.91[ASN][1000 genomes] |
rs58507155 | 0.93[ASN][1000 genomes] |
rs59328971 | 0.91[ASN][1000 genomes] |
rs59357371 | 0.89[ASN][1000 genomes] |
rs59905171 | 0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs61317680 | 0.90[ASN][1000 genomes] |
rs61544265 | 0.93[ASN][1000 genomes] |
rs7140378 | 0.92[ASN][1000 genomes] |
rs7142629 | 0.93[ASN][1000 genomes] |
rs7142937 | 0.93[ASN][1000 genomes] |
rs7144227 | 0.93[ASN][1000 genomes] |
rs7144527 | 0.93[ASN][1000 genomes] |
rs7144901 | 0.93[ASN][1000 genomes] |
rs7145187 | 0.93[ASN][1000 genomes] |
rs7145439 | 0.93[ASN][1000 genomes] |
rs7146538 | 0.93[ASN][1000 genomes] |
rs7153447 | 0.93[ASN][1000 genomes] |
rs7153608 | 0.91[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs7154407 | 0.93[ASN][1000 genomes] |
rs7158199 | 0.93[ASN][1000 genomes] |
rs7158316 | 0.93[ASN][1000 genomes] |
rs7159040 | 0.93[ASN][1000 genomes] |
rs7159290 | 0.93[ASN][1000 genomes] |
rs7159691 | 0.93[ASN][1000 genomes] |
rs7160120 | 0.91[ASN][1000 genomes] |
rs7160744 | 0.93[ASN][1000 genomes] |
rs73287042 | 0.91[ASN][1000 genomes] |
rs73287091 | 0.93[ASN][1000 genomes] |
rs73287092 | 0.93[ASN][1000 genomes] |
rs73287099 | 0.93[ASN][1000 genomes] |
rs73288913 | 0.93[ASN][1000 genomes] |
rs8004314 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs8005783 | 0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs8006589 | 0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs8007444 | 0.93[ASN][1000 genomes] |
rs8008108 | 0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs8012389 | 0.93[ASN][1000 genomes] |
rs8014415 | 0.93[ASN][1000 genomes] |
rs8014498 | 0.93[ASN][1000 genomes] |
rs8017757 | 0.91[ASN][1000 genomes] |
rs8018839 | 0.93[ASN][1000 genomes] |
rs8019044 | 0.91[ASN][1000 genomes] |
rs8019252 | 0.93[ASN][1000 genomes] |
rs8022898 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv533129 | chr14:56568535-56819234 | Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr14:56574000-56582600 | Enhancers | Primary neutrophils fromperipheralblood | blood |
2 | chr14:56578600-56581000 | Enhancers | Primary monocytes fromperipheralblood | blood |
3 | chr14:56579000-56580200 | Flanking Active TSS | Monocytes-CD14+_RO01746 | blood |
4 | chr14:56579200-56580200 | Enhancers | Primary T cells from cord blood | blood |
5 | chr14:56579400-56580200 | Enhancers | Primary T helper cells PMA-I stimulated | -- |
6 | chr14:56579400-56580400 | Enhancers | Primary T helper naive cells fromperipheralblood | blood |
7 | chr14:56579600-56580400 | Enhancers | Primary B cells from cord blood | blood |
8 | chr14:56579800-56582800 | Weak transcription | Primary T killer memory cells from peripheral blood | blood |
9 | chr14:56579800-56584200 | Weak transcription | Rectal Smooth Muscle | rectum |