Variant report

Variant	rs10171600
Chromosome Location	chr2:208674142-208674143
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:208673912..208675844-chr2:208711405..208713067,2	MCF-7	breast:
2	chr2:208665413..208667175-chr2:208673822..208675583,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10172705	1.00[AMR][1000 genomes]
rs10174414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10174657	1.00[AMR][1000 genomes]
rs10175036	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10184401	1.00[AMR][1000 genomes]
rs10186630	1.00[AMR][1000 genomes]
rs10204201	1.00[AMR][1000 genomes]
rs13397055	1.00[AMR][1000 genomes]
rs13422757	1.00[AMR][1000 genomes]
rs6756930	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010531	chr2:208610639-209176782	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv536130	chr2:208610639-209176782	Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:208662000-208674800	Weak transcription	Right Atrium	heart
2	chr2:208662200-208674600	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr2:208667800-208674800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr2:208669400-208675200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr2:208669600-208675200	Weak transcription	GM12878-XiMat	blood
6	chr2:208669800-208675000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr2:208669800-208675200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr2:208671000-208674600	Weak transcription	Fetal Intestine Small	intestine
9	chr2:208671000-208674800	Weak transcription	Duodenum Mucosa	Duodenum
10	chr2:208671000-208675000	Weak transcription	Adipose Nuclei	Adipose
11	chr2:208671000-208675000	Weak transcription	Fetal Muscle Leg	muscle
12	chr2:208671000-208675200	Weak transcription	Esophagus	oesophagus
13	chr2:208671200-208674600	Weak transcription	Liver	Liver
14	chr2:208671200-208674800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr2:208671200-208674800	Weak transcription	A549	lung
16	chr2:208671200-208675000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr2:208671200-208675000	Weak transcription	Placenta	Placenta
18	chr2:208671200-208675200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr2:208671200-208675400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr2:208671200-208675400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr2:208671200-208684000	Weak transcription	HSMM	muscle
22	chr2:208671400-208674600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr2:208671400-208674600	Weak transcription	HMEC	breast
24	chr2:208671400-208674800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr2:208671400-208675200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr2:208671800-208674800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr2:208672000-208674600	Weak transcription	NHEK	skin
28	chr2:208672800-208675200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr2:208673000-208675000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr2:208673400-208674800	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr2:208673400-208674800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr2:208673600-208674800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr2:208673600-208674800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr2:208673600-208674800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr2:208673800-208674800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr2:208673800-208674800	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr2:208673800-208674800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr2:208673800-208674800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr2:208673800-208674800	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr2:208673800-208674800	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr2:208673800-208674800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr2:208673800-208674800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr2:208673800-208674800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr2:208673800-208674800	Weak transcription	Left Ventricle	heart
45	chr2:208673800-208675000	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr2:208673800-208675000	Weak transcription	Lung	lung
47	chr2:208673800-208675000	Weak transcription	Pancreas	Pancrea
48	chr2:208673800-208675000	Enhancers	HepG2	liver
49	chr2:208674000-208674400	Weak transcription	Fetal Intestine Large	intestine

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