Variant report

Variant	rs10204201
Chromosome Location	chr2:208564365-208564366
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10171600	1.00[AMR][1000 genomes]
rs10172705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10174414	1.00[AMR][1000 genomes]
rs10174657	1.00[AMR][1000 genomes]
rs10175036	1.00[AMR][1000 genomes]
rs10184401	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13397055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875742	chr2:208489101-208618400	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:208563600-208568600	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr2:208563600-208569000	Weak transcription	Stomach Mucosa	stomach
3	chr2:208564000-208568600	Weak transcription	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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