Variant report

Variant	rs10184401
Chromosome Location	chr2:208559890-208559891
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10171600	1.00[AMR][1000 genomes]
rs10172705	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10174414	1.00[AMR][1000 genomes]
rs10174657	1.00[AMR][1000 genomes]
rs10175036	1.00[AMR][1000 genomes]
rs10204201	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13397055	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875742	chr2:208489101-208618400	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:208557800-208562600	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr2:208558800-208560600	Enhancers	Muscle Satellite Cultured Cells	--
3	chr2:208559000-208560400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr2:208559200-208560000	Enhancers	HSMM	muscle
5	chr2:208559200-208560200	Enhancers	Osteobl	bone
6	chr2:208559400-208560200	Flanking Active TSS	A549	lung
7	chr2:208559400-208560400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr2:208559600-208560000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr2:208559600-208560400	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr2:208559600-208560400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr2:208559600-208560400	Enhancers	HSMMtube	muscle
12	chr2:208559600-208560800	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr2:208559600-208561000	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr2:208559600-208561200	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr2:208559600-208561800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr2:208559600-208562400	Enhancers	HepG2	liver
17	chr2:208559800-208560200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr2:208559800-208560200	Enhancers	GM12878-XiMat	blood
19	chr2:208559800-208560400	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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