Variant report

Variant	rs13397055
Chromosome Location	chr2:208607009-208607010
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:208606145..208609012-chr2:208632572..208635234,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163251	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10171600	1.00[AMR][1000 genomes]
rs10172705	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10174414	1.00[AMR][1000 genomes]
rs10174657	1.00[AMR][1000 genomes]
rs10175036	1.00[AMR][1000 genomes]
rs10184401	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10186630	1.00[AMR][1000 genomes]
rs10204201	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875742	chr2:208489101-208618400	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:208577200-208607200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:208577400-208628200	Weak transcription	Psoas Muscle	Psoas
3	chr2:208577600-208607200	Weak transcription	Fetal Stomach	stomach
4	chr2:208577600-208607200	Weak transcription	Fetal Thymus	thymus
5	chr2:208577600-208607400	Weak transcription	Esophagus	oesophagus
6	chr2:208577600-208615000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr2:208577600-208626600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr2:208577800-208608600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr2:208577800-208631600	Weak transcription	Right Ventricle	heart
10	chr2:208578000-208607200	Weak transcription	Pancreas	Pancrea
11	chr2:208578000-208607200	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr2:208578200-208607200	Weak transcription	Fetal Muscle Leg	muscle
13	chr2:208578200-208607200	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr2:208579000-208607200	Weak transcription	Thymus	Thymus
15	chr2:208582400-208607400	Weak transcription	Rectal Smooth Muscle	rectum
16	chr2:208583200-208632000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr2:208583400-208630400	Weak transcription	Colon Smooth Muscle	Colon
18	chr2:208585600-208607400	Weak transcription	Placenta	Placenta
19	chr2:208585800-208607200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr2:208585800-208614800	Weak transcription	Fetal Lung	lung
21	chr2:208585800-208622000	Weak transcription	Fetal Brain Male	brain
22	chr2:208588200-208607200	Weak transcription	Stomach Smooth Muscle	stomach
23	chr2:208591000-208607200	Weak transcription	Brain Cingulate Gyrus	brain
24	chr2:208591000-208607400	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr2:208591200-208607200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr2:208591200-208607400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr2:208591800-208616600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr2:208592000-208614800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr2:208592400-208607200	Weak transcription	Fetal Brain Female	brain
30	chr2:208592400-208614200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr2:208592600-208607200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr2:208592600-208607200	Weak transcription	Brain Hippocampus Middle	brain
33	chr2:208592600-208607200	Weak transcription	HSMMtube	muscle
34	chr2:208592600-208607400	Weak transcription	Brain Germinal Matrix	brain
35	chr2:208592600-208617000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr2:208593400-208607200	Weak transcription	Fetal Muscle Trunk	muscle
37	chr2:208593600-208612800	Weak transcription	K562	blood
38	chr2:208594200-208630000	Weak transcription	Fetal Heart	heart
39	chr2:208594400-208607200	Weak transcription	NHEK	skin
40	chr2:208594400-208607400	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr2:208594400-208615000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr2:208594600-208607400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr2:208594600-208610000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr2:208595200-208607200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr2:208595200-208607200	Weak transcription	Lung	lung
46	chr2:208595200-208607200	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr2:208595200-208607200	Weak transcription	Spleen	Spleen
48	chr2:208595200-208612600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr2:208595200-208612800	Weak transcription	Gastric	stomach
50	chr2:208595400-208607200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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