Variant report

Variant	rs10172705
Chromosome Location	chr2:208609019-208609020
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10171600	1.00[AMR][1000 genomes]
rs10174414	1.00[AMR][1000 genomes]
rs10174657	1.00[AMR][1000 genomes]
rs10175036	1.00[AMR][1000 genomes]
rs10184401	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10186630	1.00[AMR][1000 genomes]
rs10204201	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13397055	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875742	chr2:208489101-208618400	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:208577400-208628200	Weak transcription	Psoas Muscle	Psoas
2	chr2:208577600-208615000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:208577600-208626600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr2:208577800-208631600	Weak transcription	Right Ventricle	heart
5	chr2:208583200-208632000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr2:208583400-208630400	Weak transcription	Colon Smooth Muscle	Colon
7	chr2:208585800-208614800	Weak transcription	Fetal Lung	lung
8	chr2:208585800-208622000	Weak transcription	Fetal Brain Male	brain
9	chr2:208591800-208616600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr2:208592000-208614800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr2:208592400-208614200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr2:208592600-208617000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr2:208593600-208612800	Weak transcription	K562	blood
14	chr2:208594200-208630000	Weak transcription	Fetal Heart	heart
15	chr2:208594400-208615000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr2:208594600-208610000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr2:208595200-208612600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr2:208595200-208612800	Weak transcription	Gastric	stomach
19	chr2:208598400-208617800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr2:208600200-208611000	Weak transcription	Stomach Mucosa	stomach
21	chr2:208602200-208615400	Weak transcription	NHLF	lung
22	chr2:208602600-208609800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr2:208602600-208619400	Weak transcription	Ovary	ovary
24	chr2:208603200-208610200	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr2:208603800-208619200	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr2:208605000-208609800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr2:208605400-208627200	Weak transcription	Fetal Kidney	kidney
28	chr2:208606800-208609400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr2:208606800-208610000	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr2:208607000-208609400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
31	chr2:208607000-208609600	Strong transcription	HUES48 Cell Line	embryonic stem cell
32	chr2:208607000-208609600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr2:208607000-208610000	Strong transcription	Duodenum Smooth Muscle	Duodenum
34	chr2:208607000-208610200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr2:208607000-208610200	Strong transcription	Primary T cells from cord blood	blood
36	chr2:208607000-208610200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr2:208607000-208610400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr2:208607200-208609200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr2:208607200-208609200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr2:208607200-208609200	Strong transcription	Adipose Nuclei	Adipose
41	chr2:208607200-208609200	Strong transcription	Rectal Mucosa Donor 29	rectum
42	chr2:208607200-208609200	Strong transcription	Stomach Smooth Muscle	stomach
43	chr2:208607200-208609400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr2:208607200-208609600	Strong transcription	HUES6 Cell Line	embryonic stem cell
45	chr2:208607200-208609800	Strong transcription	Primary B cells from cord blood	blood
46	chr2:208607200-208609800	Strong transcription	HepG2	liver
47	chr2:208607200-208610000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr2:208607200-208610000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chr2:208607200-208610000	Strong transcription	Spleen	Spleen
50	chr2:208607200-208610200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links