Variant report

Variant	rs10174657
Chromosome Location	chr2:208674840-208674841
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:208673912..208675844-chr2:208711405..208713067,2	MCF-7	breast:
2	chr2:208665413..208667175-chr2:208673822..208675583,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10171600	1.00[AMR][1000 genomes]
rs10172705	1.00[AMR][1000 genomes]
rs10174414	1.00[AMR][1000 genomes]
rs10175036	1.00[AMR][1000 genomes]
rs10184401	1.00[AMR][1000 genomes]
rs10186630	1.00[AMR][1000 genomes]
rs10204201	1.00[AMR][1000 genomes]
rs13397055	1.00[AMR][1000 genomes]
rs13422757	1.00[AMR][1000 genomes]
rs6756930	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010531	chr2:208610639-209176782	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv536130	chr2:208610639-209176782	Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:208669400-208675200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:208669600-208675200	Weak transcription	GM12878-XiMat	blood
3	chr2:208669800-208675000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr2:208669800-208675200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr2:208671000-208675000	Weak transcription	Adipose Nuclei	Adipose
6	chr2:208671000-208675000	Weak transcription	Fetal Muscle Leg	muscle
7	chr2:208671000-208675200	Weak transcription	Esophagus	oesophagus
8	chr2:208671200-208675000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr2:208671200-208675000	Weak transcription	Placenta	Placenta
10	chr2:208671200-208675200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr2:208671200-208675400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr2:208671200-208675400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr2:208671200-208684000	Weak transcription	HSMM	muscle
14	chr2:208671400-208675200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr2:208672800-208675200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr2:208673000-208675000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr2:208673800-208675000	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr2:208673800-208675000	Weak transcription	Lung	lung
19	chr2:208673800-208675000	Weak transcription	Pancreas	Pancrea
20	chr2:208673800-208675000	Enhancers	HepG2	liver
21	chr2:208674400-208675400	Enhancers	Fetal Intestine Large	intestine
22	chr2:208674600-208675000	Enhancers	Liver	Liver
23	chr2:208674600-208675000	Enhancers	Rectal Mucosa Donor 29	rectum
24	chr2:208674600-208675200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr2:208674600-208675200	Enhancers	Stomach Mucosa	stomach
26	chr2:208674600-208675200	Enhancers	NHEK	skin
27	chr2:208674600-208675400	Enhancers	Fetal Intestine Small	intestine
28	chr2:208674600-208676000	Enhancers	HMEC	breast
29	chr2:208674800-208675000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr2:208674800-208675000	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr2:208674800-208675000	Enhancers	Hela-S3	cervix
32	chr2:208674800-208675200	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr2:208674800-208675200	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr2:208674800-208675200	Enhancers	Colonic Mucosa	Colon
35	chr2:208674800-208675400	Enhancers	Duodenum Smooth Muscle	Duodenum
36	chr2:208674800-208675400	Enhancers	Rectal Mucosa Donor 31	rectum
37	chr2:208674800-208675400	Enhancers	Small Intestine	intestine
38	chr2:208674800-208675400	Enhancers	HUVEC	blood vessel
39	chr2:208674800-208675600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr2:208674800-208675600	Enhancers	iPS-15b Cell Line	embryonic stem cell
41	chr2:208674800-208675600	Enhancers	iPS-18 Cell Line	embryonic stem cell
42	chr2:208674800-208675600	Flanking Active TSS	Duodenum Mucosa	Duodenum
43	chr2:208674800-208675600	Enhancers	Right Atrium	heart
44	chr2:208674800-208675800	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr2:208674800-208676000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr2:208674800-208676000	Enhancers	H9 Cell Line	embryonic stem cell
47	chr2:208674800-208676000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
48	chr2:208674800-208676000	Enhancers	Breast Myoepithelial Primary Cells	Breast
49	chr2:208674800-208676200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr2:208674800-208676200	Enhancers	HUES64 Cell Line	embryonic stem cell

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