Variant report

Variant	rs10189140
Chromosome Location	chr2:191418767-191418768
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10169169	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10171376	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10173975	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10179262	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10185147	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10185228	0.81[EUR][1000 genomes]
rs10202274	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10204342	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10208737	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10209340	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10211375	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10737936	0.81[EUR][1000 genomes]
rs11553601	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11695439	0.84[ASN][1000 genomes]
rs13031452	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13384743	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13386210	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13388162	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13395233	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13398741	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13405215	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13410179	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13412663	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13412823	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13412835	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13412879	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13417310	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13418943	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13429315	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1837686	0.87[ASN][1000 genomes]
rs3811608	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4283453	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4853712	0.95[ASN][1000 genomes]
rs4853719	0.81[EUR][1000 genomes]
rs56715527	0.84[ASN][1000 genomes]
rs58210597	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58253207	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58433478	0.92[ASN][1000 genomes]
rs58708643	0.87[ASN][1000 genomes]
rs6434401	0.81[EUR][1000 genomes]
rs6706036	0.81[EUR][1000 genomes]
rs6711561	0.81[EUR][1000 genomes]
rs6717050	0.97[ASN][1000 genomes]
rs6741118	0.81[EUR][1000 genomes]
rs72903349	0.82[ASN][1000 genomes]
rs72903383	0.86[ASN][1000 genomes]
rs72905242	0.92[ASN][1000 genomes]
rs73054092	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7556716	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7560045	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7562013	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7564107	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7574844	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7584379	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7594994	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7609330	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs894072	0.86[ASN][1000 genomes]
rs9288174	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9967829	0.81[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10189140	FLJ20160	cis	multi-tissue	Pritchard
rs10189140	FLJ20160	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191411000-191443000	Weak transcription	Right Atrium	heart
2	chr2:191417000-191418800	Weak transcription	Gastric	stomach
3	chr2:191417000-191419000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:191417000-191419400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr2:191417600-191427800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr2:191418000-191427000	Weak transcription	Pancreas	Pancrea
7	chr2:191418200-191426800	Weak transcription	Primary T cells from cord blood	blood
8	chr2:191418400-191419600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr2:191418600-191419600	Enhancers	Stomach Mucosa	stomach
10	chr2:191418600-191419800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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