Variant report

Variant	rs11695439
Chromosome Location	chr2:191261942-191261943
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:191260830..191263266-chr2:191267814..191270038,2	MCF-7	breast:
2	chr2:191261790..191264182-chr2:191272101..191274453,3	MCF-7	breast:
3	chr2:191259886..191262388-chr2:191262413..191264371,2	K562	blood:

Variant related genes	Relation type
ENSG00000151690	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10169169	0.84[ASN][1000 genomes]
rs10171376	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs10173975	0.84[ASN][1000 genomes]
rs10179262	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs10185147	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs10189140	0.84[ASN][1000 genomes]
rs10202274	0.85[ASN][1000 genomes]
rs10204342	0.84[ASN][1000 genomes]
rs10208737	1.00[CHB][hapmap];0.92[CHD][hapmap];0.84[ASN][1000 genomes]
rs10209340	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs10211375	0.84[ASN][1000 genomes]
rs11553601	1.00[CHB][hapmap];0.92[CHD][hapmap];0.86[ASN][1000 genomes]
rs11687958	0.91[YRI][hapmap]
rs13031452	0.84[ASN][1000 genomes]
rs13384743	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs13386210	1.00[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs13388162	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs13395233	1.00[CHB][hapmap];0.92[CHD][hapmap];0.86[ASN][1000 genomes]
rs13398741	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs13405215	0.86[ASN][1000 genomes]
rs13410179	1.00[CHB][hapmap];0.96[CHD][hapmap];0.90[ASN][1000 genomes]
rs13412663	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs13412823	0.82[ASN][1000 genomes]
rs13412835	0.83[ASN][1000 genomes]
rs13417310	0.84[ASN][1000 genomes]
rs13418943	0.86[ASN][1000 genomes]
rs13429315	0.86[ASN][1000 genomes]
rs1837686	0.96[ASN][1000 genomes]
rs3811608	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs4283453	1.00[CHB][hapmap];0.92[CHD][hapmap];0.87[ASN][1000 genomes]
rs4853707	0.91[YRI][hapmap]
rs4853712	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs56715527	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58210597	0.86[ASN][1000 genomes]
rs58253207	0.86[ASN][1000 genomes]
rs58433478	0.91[ASN][1000 genomes]
rs58708643	0.96[ASN][1000 genomes]
rs6717050	0.86[ASN][1000 genomes]
rs72903349	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72903383	0.97[ASN][1000 genomes]
rs72905242	0.91[ASN][1000 genomes]
rs73054092	0.84[ASN][1000 genomes]
rs7556716	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs7560045	0.84[ASN][1000 genomes]
rs7562013	1.00[CHB][hapmap];0.92[CHD][hapmap];0.84[ASN][1000 genomes]
rs7564107	1.00[CHB][hapmap];0.92[CHD][hapmap];0.86[ASN][1000 genomes]
rs7574844	0.84[ASN][1000 genomes]
rs7584379	0.84[ASN][1000 genomes]
rs7594994	1.00[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs7609330	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs894072	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs8962	1.00[CHB][hapmap]
rs9288174	1.00[CHB][hapmap];0.92[CHD][hapmap];0.84[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs11695439	MFSD6	cis	cerebellum	SCAN
rs11695439	ASNSD1	cis	parietal	SCAN
rs11695439	FLJ20160	Cis_1M	lymphoblastoid	RTeQTL
rs11695439	TMEM194B	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191261400-191262400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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