Variant report

Variant	rs10208737
Chromosome Location	chr2:191402299-191402300
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SETDB1	chr2:191401991-191403108	U2OS	brain:	n/a	n/a
2	KAP1	chr2:191401965-191402945	HEK293	kidney:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:191401207..191403475-chr2:191412047..191414173,2	K562	blood:
2	chr2:191398233..191400106-chr2:191402182..191403858,2	MCF-7	breast:
3	chr2:191173738..191175735-chr2:191400654..191403444,2	K562	blood:
4	chr2:191399578..191402391-chr2:191744786..191747033,2	K562	blood:
5	chr2:191401207..191403426-chr2:191411278..191414173,2	K562	blood:

No data

Variant related genes	Relation type
TMEM194B	TF binding region
ENSG00000189362	Chromatin interaction
ENSG00000235852	Chromatin interaction
ENSG00000115419	Chromatin interaction
ENSG00000233654	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10169169	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10171376	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10173975	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10179262	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10185147	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10189140	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10202274	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10204342	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10209340	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10211375	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10737936	0.83[CEU][hapmap];0.82[CHB][hapmap];1.00[GIH][hapmap];0.92[MEX][hapmap];0.85[TSI][hapmap]
rs11553601	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.97[TSI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11695439	1.00[CHB][hapmap];0.92[CHD][hapmap];0.84[ASN][1000 genomes]
rs13031452	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13384743	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13386210	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13388162	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13395233	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13398741	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13405215	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13410179	1.00[CHB][hapmap];0.96[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13412663	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13412823	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13412835	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13412879	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13417310	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13418943	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13429315	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1837686	0.87[ASN][1000 genomes]
rs3811608	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4283453	1.00[CHB][hapmap];0.92[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4853712	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs56715527	0.84[ASN][1000 genomes]
rs58210597	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58253207	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58433478	0.92[ASN][1000 genomes]
rs58708643	0.87[ASN][1000 genomes]
rs6434401	0.83[CEU][hapmap];0.82[CHB][hapmap];1.00[GIH][hapmap];0.92[MEX][hapmap];0.85[TSI][hapmap]
rs6717050	0.97[ASN][1000 genomes]
rs72903349	0.82[ASN][1000 genomes]
rs72903383	0.86[ASN][1000 genomes]
rs72905242	0.92[ASN][1000 genomes]
rs73054092	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7556716	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7560045	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7562013	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7564107	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7574844	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7584379	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7594994	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7609330	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs894072	1.00[CHB][hapmap];0.92[CHD][hapmap];0.86[ASN][1000 genomes]
rs8962	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9288174	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9967829	0.83[CEU][hapmap];0.82[CHB][hapmap]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs10208737	TMEM194B	cis	cerebellum	SCAN
rs10208737	ASNSD1	cis	parietal	SCAN
rs10208737	MFSD6	cis	parietal	SCAN
rs10208737	FLJ20160	cis	multi-tissue	Pritchard
rs10208737	FLJ20160	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191399800-191402600	Weak transcription	Spleen	Spleen
2	chr2:191400000-191402400	Weak transcription	Ovary	ovary
3	chr2:191400000-191402600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr2:191400000-191402600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:191400000-191402600	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr2:191400000-191402600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr2:191400000-191402600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr2:191400000-191402600	Weak transcription	Brain Angular Gyrus	brain
9	chr2:191400000-191402600	Weak transcription	Esophagus	oesophagus
10	chr2:191400000-191402600	Weak transcription	Gastric	stomach
11	chr2:191400000-191402600	Weak transcription	Lung	lung
12	chr2:191400000-191402600	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr2:191400000-191402600	Weak transcription	HSMMtube	muscle
14	chr2:191400200-191402600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr2:191400200-191402600	Weak transcription	Psoas Muscle	Psoas
16	chr2:191400400-191402600	Weak transcription	Aorta	Aorta
17	chr2:191400400-191402600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr2:191400600-191402400	Weak transcription	Adipose Nuclei	Adipose
19	chr2:191400600-191402400	Weak transcription	NHDF-Ad	bronchial
20	chr2:191400600-191402600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr2:191400600-191402600	Weak transcription	Brain Cingulate Gyrus	brain
22	chr2:191400600-191402600	Weak transcription	Colonic Mucosa	Colon
23	chr2:191400600-191402600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr2:191400600-191402600	Weak transcription	Fetal Brain Male	brain
25	chr2:191400600-191402600	Weak transcription	Fetal Kidney	kidney
26	chr2:191400600-191402600	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr2:191400600-191402600	Weak transcription	Right Atrium	heart
28	chr2:191400600-191402600	Weak transcription	Right Ventricle	heart
29	chr2:191400600-191402600	Weak transcription	Thymus	Thymus
30	chr2:191400600-191403000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr2:191400600-191404600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr2:191400800-191402400	Weak transcription	Brain Hippocampus Middle	brain
33	chr2:191400800-191402400	Weak transcription	Fetal Intestine Large	intestine
34	chr2:191400800-191402600	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr2:191400800-191402600	Weak transcription	Colon Smooth Muscle	Colon
36	chr2:191400800-191402600	Weak transcription	Duodenum Mucosa	Duodenum
37	chr2:191400800-191402600	Weak transcription	Placenta	Placenta
38	chr2:191400800-191402600	Weak transcription	Fetal Stomach	stomach
39	chr2:191400800-191402600	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr2:191400800-191402600	Weak transcription	Rectal Smooth Muscle	rectum
41	chr2:191400800-191402600	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr2:191400800-191402600	Weak transcription	NH-A	brain
43	chr2:191401000-191402400	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr2:191401000-191402600	Weak transcription	Primary T cells from cord blood	blood
45	chr2:191401000-191402600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr2:191401200-191402400	Weak transcription	Primary B cells from cord blood	blood
47	chr2:191401200-191402600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr2:191401200-191402600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr2:191401200-191402600	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr2:191401200-191402600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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