Variant report

Variant	rs8962
Chromosome Location	chr2:191371649-191371650
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10169169	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10171376	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10173975	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10179262	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10185147	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10185228	0.80[EUR][1000 genomes]
rs10189140	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10202274	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10204342	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10208737	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10209340	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10211375	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10737936	0.83[CEU][hapmap];0.82[CHB][hapmap];0.80[EUR][1000 genomes]
rs11553601	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11695439	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs13031452	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13384743	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13386210	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13388162	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13395233	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13398741	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13405215	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13410179	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13412663	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13412823	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13412835	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13412879	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13417310	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13418943	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13421959	1.00[YRI][hapmap]
rs13429315	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1837686	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs3811608	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4283453	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4853712	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4853719	0.80[EUR][1000 genomes]
rs56715527	0.86[ASN][1000 genomes]
rs58210597	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58253207	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58433478	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58708643	0.87[ASN][1000 genomes]
rs6434401	0.83[CEU][hapmap];0.82[CHB][hapmap];0.80[EUR][1000 genomes]
rs6706036	0.80[EUR][1000 genomes]
rs6711561	0.80[EUR][1000 genomes]
rs6717050	0.95[ASN][1000 genomes]
rs6741118	0.80[EUR][1000 genomes]
rs72903349	0.85[ASN][1000 genomes]
rs72903383	0.88[ASN][1000 genomes]
rs72905242	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73054092	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7556716	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7560045	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7562013	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7564107	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7574844	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7584379	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7594994	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7609330	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs894072	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs9288174	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9967829	0.83[CEU][hapmap];0.82[CHB][hapmap];0.80[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs8962	FLJ20160	Cis_1M	lymphoblastoid	RTeQTL
rs8962	FLJ20160	cis	multi-tissue	Pritchard

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191334800-191394800	Weak transcription	HSMMtube	muscle
2	chr2:191343000-191372000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr2:191343400-191373800	Weak transcription	Colonic Mucosa	Colon
4	chr2:191349600-191394600	Weak transcription	NHLF	lung
5	chr2:191351200-191373400	Weak transcription	Small Intestine	intestine
6	chr2:191351400-191385400	Weak transcription	NHEK	skin
7	chr2:191352200-191380600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr2:191352400-191381600	Weak transcription	Osteobl	bone
9	chr2:191354600-191394600	Weak transcription	HSMM	muscle
10	chr2:191357200-191398200	Weak transcription	Fetal Kidney	kidney
11	chr2:191358400-191379200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr2:191359600-191374800	Weak transcription	Fetal Heart	heart
13	chr2:191361000-191376000	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr2:191361600-191379800	Strong transcription	Fetal Thymus	thymus
15	chr2:191361800-191375800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr2:191361800-191376000	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr2:191362000-191374000	Strong transcription	Primary hematopoietic stem cells	blood
18	chr2:191362000-191375200	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr2:191362000-191375400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr2:191362000-191375400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr2:191362000-191375400	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr2:191362200-191379200	Strong transcription	Dnd41	blood
23	chr2:191362800-191398200	Weak transcription	Fetal Brain Male	brain
24	chr2:191363000-191374800	Weak transcription	Colon Smooth Muscle	Colon
25	chr2:191363200-191372000	Weak transcription	Psoas Muscle	Psoas
26	chr2:191363600-191374200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr2:191364000-191372000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr2:191364000-191374000	Strong transcription	Primary T helper cells PMA-I stimulated	--
29	chr2:191364200-191376200	Strong transcription	Primary T cells from cord blood	blood
30	chr2:191365000-191373400	Weak transcription	Placenta	Placenta
31	chr2:191365000-191383200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr2:191365200-191377400	Weak transcription	Pancreas	Pancrea
33	chr2:191365200-191380000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr2:191365200-191398000	Weak transcription	Rectal Smooth Muscle	rectum
35	chr2:191365400-191392400	Weak transcription	HepG2	liver
36	chr2:191365800-191397400	Weak transcription	Liver	Liver
37	chr2:191366400-191386400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr2:191366600-191381000	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr2:191366800-191374800	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr2:191367000-191371800	Strong transcription	GM12878-XiMat	blood
41	chr2:191367200-191393000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr2:191367400-191382400	Weak transcription	NHDF-Ad	bronchial
43	chr2:191367600-191377200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr2:191368000-191373000	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr2:191368200-191374800	Weak transcription	Ovary	ovary
46	chr2:191368400-191376800	Weak transcription	Hela-S3	cervix
47	chr2:191368400-191379800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr2:191368600-191380000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr2:191368800-191377400	Weak transcription	Esophagus	oesophagus
50	chr2:191369000-191372200	Enhancers	Brain Substantia Nigra	brain

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