Variant report

Variant	rs13031452
Chromosome Location	chr2:191426890-191426891
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:191426756..191429065-chr2:191435879..191437749,2	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10169169	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10170916	0.89[YRI][hapmap]
rs10171376	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10173975	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10179262	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10185147	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10185228	0.81[EUR][1000 genomes]
rs10189140	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10202274	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10204342	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10208737	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10209340	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10211375	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10737936	0.83[CEU][hapmap];0.82[CHB][hapmap];0.81[EUR][1000 genomes]
rs11553601	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11695439	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs13384743	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13386210	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13388162	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13395233	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13398741	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13405215	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13410179	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs13412663	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13412823	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13412835	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13412879	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13417310	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13418943	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13429315	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1837686	0.87[ASN][1000 genomes]
rs3811608	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4283453	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4853712	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4853719	0.81[EUR][1000 genomes]
rs56715527	0.84[ASN][1000 genomes]
rs58210597	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58253207	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58433478	0.92[ASN][1000 genomes]
rs58708643	0.87[ASN][1000 genomes]
rs6434401	0.83[CEU][hapmap];0.82[CHB][hapmap];0.81[EUR][1000 genomes]
rs6706036	0.81[EUR][1000 genomes]
rs6711561	0.81[EUR][1000 genomes]
rs6717050	0.97[ASN][1000 genomes]
rs6741118	0.81[EUR][1000 genomes]
rs72903349	0.82[ASN][1000 genomes]
rs72903383	0.86[ASN][1000 genomes]
rs72905242	0.92[ASN][1000 genomes]
rs73054092	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7556716	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7560045	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7562013	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7564107	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7574844	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7584379	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7594994	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7609330	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs894072	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs8962	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9288174	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9967829	0.83[CEU][hapmap];0.82[CHB][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527324	chr2:191423989-191427736	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs13031452	FLJ20160	Cis_1M	lymphoblastoid	RTeQTL
rs13031452	FLJ20160	cis	multi-tissue	Pritchard

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191411000-191443000	Weak transcription	Right Atrium	heart
2	chr2:191417600-191427800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:191418000-191427000	Weak transcription	Pancreas	Pancrea
4	chr2:191419600-191427400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:191424600-191427000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr2:191424800-191427000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr2:191424800-191427000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr2:191424800-191427000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr2:191424800-191427000	Weak transcription	Left Ventricle	heart
10	chr2:191425800-191427200	Enhancers	Fetal Intestine Large	intestine
11	chr2:191425800-191427200	Enhancers	Fetal Intestine Small	intestine
12	chr2:191425800-191428600	Enhancers	Stomach Mucosa	stomach
13	chr2:191426000-191427200	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr2:191426000-191427200	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr2:191426000-191428800	Enhancers	K562	blood
16	chr2:191426200-191427000	Enhancers	Brain Angular Gyrus	brain
17	chr2:191426200-191427200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr2:191426200-191427200	Enhancers	Duodenum Mucosa	Duodenum
19	chr2:191426200-191428600	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr2:191426400-191429600	Enhancers	Fetal Heart	heart
21	chr2:191426600-191427400	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr2:191426600-191427400	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr2:191426600-191428000	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr2:191426800-191427200	Enhancers	H9 Cell Line	embryonic stem cell
25	chr2:191426800-191427200	Enhancers	Right Ventricle	heart
26	chr2:191426800-191427400	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr2:191426800-191427800	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr2:191426800-191428000	Enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr2:191426800-191428200	Enhancers	Primary T cells from cord blood	blood
30	chr2:191426800-191428200	Enhancers	Cortex derived primary cultured neurospheres	brain

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