Variant report

Variant	rs58433478
Chromosome Location	chr2:191305547-191305548
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:191302906..191304417-chr2:191305140..191306765,2	K562	blood:
2	chr2:191300907..191304417-chr2:191304488..191309004,4	K562	blood:

Variant related genes	Relation type
ENSG00000151690	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10169169	0.92[ASN][1000 genomes]
rs10171376	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10173975	0.92[ASN][1000 genomes]
rs10179262	0.92[ASN][1000 genomes]
rs10185147	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10189140	0.92[ASN][1000 genomes]
rs10202274	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10204342	0.92[ASN][1000 genomes]
rs10208737	0.92[ASN][1000 genomes]
rs10209340	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10211375	0.92[ASN][1000 genomes]
rs11553601	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11695439	0.91[ASN][1000 genomes]
rs13031452	0.92[ASN][1000 genomes]
rs13384743	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13386210	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13388162	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs13395233	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13398741	0.92[ASN][1000 genomes]
rs13405215	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs13410179	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13412663	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13412823	0.91[ASN][1000 genomes]
rs13412835	0.91[ASN][1000 genomes]
rs13412879	0.84[ASN][1000 genomes]
rs13417310	0.92[ASN][1000 genomes]
rs13418943	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13429315	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1837686	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3811608	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4283453	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4853712	0.92[ASN][1000 genomes]
rs56715527	0.91[ASN][1000 genomes]
rs58210597	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58253207	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58708643	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6717050	0.90[ASN][1000 genomes]
rs72903349	0.90[ASN][1000 genomes]
rs72903383	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72905242	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73054092	0.92[ASN][1000 genomes]
rs7556716	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7560045	0.92[ASN][1000 genomes]
rs7562013	0.92[ASN][1000 genomes]
rs7564107	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7574844	0.92[ASN][1000 genomes]
rs7584379	0.92[ASN][1000 genomes]
rs7594994	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7609330	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs894072	0.94[ASN][1000 genomes]
rs9288174	0.92[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs58433478	FLJ20160	Cis_1M	lymphoblastoid	RTeQTL
rs58433478	FLJ20160	cis	multi-tissue	Pritchard

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191284200-191311000	Weak transcription	Psoas Muscle	Psoas
2	chr2:191296800-191311400	Weak transcription	Fetal Lung	lung
3	chr2:191297200-191306200	Weak transcription	K562	blood
4	chr2:191297400-191305600	Weak transcription	Small Intestine	intestine
5	chr2:191298400-191306000	Weak transcription	Fetal Kidney	kidney
6	chr2:191298600-191309000	Weak transcription	Stomach Mucosa	stomach
7	chr2:191299600-191308800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr2:191299800-191305600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr2:191301000-191306000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr2:191301200-191307000	Weak transcription	Fetal Heart	heart
11	chr2:191301800-191305800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
12	chr2:191302000-191305600	Weak transcription	Brain Substantia Nigra	brain
13	chr2:191302000-191307800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr2:191302200-191305600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr2:191302200-191305600	Weak transcription	Gastric	stomach
16	chr2:191302200-191305600	Weak transcription	Left Ventricle	heart
17	chr2:191302200-191305600	Weak transcription	Lung	lung
18	chr2:191302200-191305600	Weak transcription	Pancreas	Pancrea
19	chr2:191302200-191305600	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr2:191302200-191306000	Weak transcription	Spleen	Spleen
21	chr2:191302200-191307200	Weak transcription	Aorta	Aorta
22	chr2:191302200-191307200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr2:191302200-191308400	Weak transcription	Fetal Muscle Leg	muscle
24	chr2:191302200-191311200	Weak transcription	Fetal Stomach	stomach
25	chr2:191302200-191311400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr2:191302200-191319200	Weak transcription	Fetal Intestine Small	intestine
27	chr2:191302200-191321200	Weak transcription	Esophagus	oesophagus
28	chr2:191302400-191306400	Weak transcription	Right Ventricle	heart
29	chr2:191302400-191307200	Weak transcription	Rectal Smooth Muscle	rectum
30	chr2:191302400-191307400	Weak transcription	Stomach Smooth Muscle	stomach
31	chr2:191302400-191308400	Weak transcription	Fetal Muscle Trunk	muscle
32	chr2:191302400-191331000	Weak transcription	A549	lung
33	chr2:191302600-191307000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr2:191302600-191309000	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr2:191302600-191309400	Enhancers	Primary T killer memory cells from peripheral blood	blood
36	chr2:191302600-191310600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
37	chr2:191302600-191311000	Weak transcription	Fetal Brain Male	brain
38	chr2:191302800-191305600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr2:191302800-191305600	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr2:191302800-191307800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr2:191302800-191308600	Weak transcription	Colonic Mucosa	Colon
42	chr2:191302800-191317200	Weak transcription	Primary B cells from peripheral blood	blood
43	chr2:191302800-191319400	Weak transcription	Fetal Brain Female	brain
44	chr2:191302800-191320200	Weak transcription	Fetal Thymus	thymus
45	chr2:191302800-191321200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr2:191303400-191310400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
47	chr2:191303400-191311000	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr2:191303400-191311200	Weak transcription	Duodenum Mucosa	Duodenum
49	chr2:191303400-191321000	Weak transcription	Thymus	Thymus
50	chr2:191303400-191321200	Weak transcription	Dnd41	blood

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