Variant report

Variant	rs10220585
Chromosome Location	chr14:85739848-85739849
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10134214	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10498582	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12050312	0.82[AMR][1000 genomes]
rs12435232	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12435574	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12879855	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1375575	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1530325	0.82[AMR][1000 genomes]
rs17796669	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1839313	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2029135	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2053514	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2372881	0.81[AMR][1000 genomes]
rs2372886	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34155469	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34235559	0.89[EUR][1000 genomes]
rs34662815	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35048084	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4904242	0.82[EUR][1000 genomes]
rs7151509	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8011992	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8012486	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8022384	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8022603	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs961166	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422273	chr14:85703149-85767292	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:85739000-85740800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr14:85739200-85740000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr14:85739400-85740000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr14:85739400-85740000	Active TSS	NHDF-Ad	bronchial
5	chr14:85739600-85740000	Flanking Active TSS	HUVEC	blood vessel
6	chr14:85739800-85740000	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links