Variant report
| Variant | rs8011992 |
|---|---|
| Chromosome Location | chr14:85741163-85741164 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10134214 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10220585 | 0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10498582 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12435232 | 1.00[EUR][1000 genomes] |
| rs12435574 | 1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12879855 | 0.99[EUR][1000 genomes] |
| rs1375575 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17796669 | 0.83[EUR][1000 genomes] |
| rs1839313 | 1.00[EUR][1000 genomes] |
| rs2029135 | 0.84[EUR][1000 genomes] |
| rs2053514 | 0.91[AFR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2372886 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34155469 | 0.99[EUR][1000 genomes] |
| rs34235559 | 0.89[EUR][1000 genomes] |
| rs34662815 | 0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs35048084 | 0.98[EUR][1000 genomes] |
| rs4904242 | 0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7151509 | 0.84[EUR][1000 genomes] |
| rs8012486 | 0.85[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs8022384 | 1.00[EUR][1000 genomes] |
| rs8022603 | 1.00[EUR][1000 genomes] |
| rs961166 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2422273 | chr14:85703149-85767292 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | esv3428690 | chr14:85740890-85741318 | Weak transcription | n/a | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:85740600-85745600 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
