Variant report
| Variant | rs10230464 |
|---|---|
| Chromosome Location | chr7:96393532-96393533 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:96338073..96340592-chr7:96391258..96394173,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000127922 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs10215002 | 1.00[AMR][1000 genomes] |
| rs10215114 | 1.00[AMR][1000 genomes] |
| rs10225229 | 1.00[AMR][1000 genomes] |
| rs10241325 | 1.00[AMR][1000 genomes] |
| rs10242346 | 1.00[AMR][1000 genomes] |
| rs10253166 | 1.00[AMR][1000 genomes] |
| rs10253355 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10254699 | 1.00[AMR][1000 genomes] |
| rs10257061 | 1.00[AMR][1000 genomes] |
| rs10266142 | 1.00[AMR][1000 genomes] |
| rs10273770 | 0.90[AFR][1000 genomes] |
| rs10275590 | 1.00[AMR][1000 genomes] |
| rs10277274 | 1.00[AMR][1000 genomes] |
| rs28588306 | 1.00[AMR][1000 genomes] |
| rs28623221 | 1.00[AMR][1000 genomes] |
| rs28816074 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831065 | chr7:96275832-96436031 | Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
