Variant report

Variant	rs10266142
Chromosome Location	chr7:96287913-96287914
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:96287815..96289788-chr7:96460345..96461965,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10215002	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10215114	1.00[AMR][1000 genomes]
rs10225229	1.00[AMR][1000 genomes]
rs10230464	1.00[AMR][1000 genomes]
rs10241325	1.00[AMR][1000 genomes]
rs10242346	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10253166	1.00[AMR][1000 genomes]
rs10253355	1.00[AMR][1000 genomes]
rs10254699	1.00[AMR][1000 genomes]
rs10257061	1.00[AMR][1000 genomes]
rs10275590	1.00[AMR][1000 genomes]
rs10277274	1.00[AMR][1000 genomes]
rs28588306	1.00[AMR][1000 genomes]
rs28623221	1.00[AMR][1000 genomes]
rs28816074	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888756	chr7:95937098-96343665	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv831064	chr7:96107530-96289042	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv532174	chr7:96221237-96375826	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv831065	chr7:96275832-96436031	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96249800-96292800	Weak transcription	Left Ventricle	heart
2	chr7:96250200-96317400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr7:96258200-96299800	Weak transcription	Ovary	ovary
4	chr7:96266000-96301200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr7:96266600-96317000	Weak transcription	Right Ventricle	heart
6	chr7:96267600-96301400	Weak transcription	Aorta	Aorta
7	chr7:96272200-96301400	Weak transcription	Spleen	Spleen
8	chr7:96278400-96301400	Weak transcription	Psoas Muscle	Psoas
9	chr7:96282200-96295200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr7:96283200-96293600	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr7:96284200-96288800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr7:96284400-96320000	Weak transcription	Pancreas	Pancrea
13	chr7:96284400-96331200	Weak transcription	Lung	lung
14	chr7:96284600-96300200	Weak transcription	Fetal Stomach	stomach
15	chr7:96285200-96289000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr7:96285400-96288200	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr7:96285600-96319800	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr7:96286200-96288400	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr7:96286400-96288000	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr7:96286400-96288200	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr7:96286400-96288400	Enhancers	HUVEC	blood vessel
22	chr7:96286400-96308400	Weak transcription	Brain Anterior Caudate	brain
23	chr7:96286600-96288000	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr7:96286800-96288200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr7:96287000-96288400	Enhancers	H1 Cell Line	embryonic stem cell
26	chr7:96287000-96289400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr7:96287400-96288400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr7:96287400-96288600	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr7:96287400-96296000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr7:96287400-96301800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr7:96287800-96317000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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