Variant report

Variant	rs10253355
Chromosome Location	chr7:96351876-96351877
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10215002	1.00[AMR][1000 genomes]
rs10215114	1.00[AMR][1000 genomes]
rs10225229	1.00[AMR][1000 genomes]
rs10230464	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10241325	1.00[AMR][1000 genomes]
rs10242346	1.00[AMR][1000 genomes]
rs10253166	1.00[AMR][1000 genomes]
rs10254699	1.00[AMR][1000 genomes]
rs10257061	1.00[AMR][1000 genomes]
rs10266142	1.00[AMR][1000 genomes]
rs10273770	0.81[AFR][1000 genomes]
rs10275590	1.00[AMR][1000 genomes]
rs10277274	1.00[AMR][1000 genomes]
rs28588306	1.00[AMR][1000 genomes]
rs28623221	1.00[AMR][1000 genomes]
rs28816074	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532174	chr7:96221237-96375826	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv831065	chr7:96275832-96436031	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96348600-96352800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr7:96348600-96353200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr7:96348800-96353200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr7:96348800-96353200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr7:96349000-96352800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr7:96349000-96352800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr7:96350000-96353000	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr7:96350800-96353000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr7:96350800-96353000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr7:96350800-96356800	Weak transcription	HMEC	breast
11	chr7:96350800-96357000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr7:96351000-96356600	Weak transcription	NHEK	skin
13	chr7:96351200-96353200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr7:96351400-96372800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr7:96351800-96352000	Enhancers	Esophagus	oesophagus
16	chr7:96351800-96352000	Enhancers	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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