Variant report

Variant	rs10241325
Chromosome Location	chr7:96343208-96343209
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10215002	1.00[AMR][1000 genomes]
rs10215114	1.00[AMR][1000 genomes]
rs10225229	1.00[AMR][1000 genomes]
rs10230464	1.00[AMR][1000 genomes]
rs10242346	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10253166	1.00[AMR][1000 genomes]
rs10253355	1.00[AMR][1000 genomes]
rs10254699	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10257061	1.00[AMR][1000 genomes]
rs10266142	1.00[AMR][1000 genomes]
rs10275590	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10277274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28588306	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28623221	1.00[AMR][1000 genomes]
rs28816074	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888756	chr7:95937098-96343665	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv532174	chr7:96221237-96375826	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv831065	chr7:96275832-96436031	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96340000-96350000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:96342200-96343600	ZNF genes & repeats	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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