Variant report

Variant	rs28623221
Chromosome Location	chr7:96229048-96229049
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10215002	1.00[AMR][1000 genomes]
rs10215114	1.00[AMR][1000 genomes]
rs10225229	1.00[AMR][1000 genomes]
rs10230464	1.00[AMR][1000 genomes]
rs10241325	1.00[AMR][1000 genomes]
rs10242346	1.00[AMR][1000 genomes]
rs10253166	1.00[AMR][1000 genomes]
rs10253355	1.00[AMR][1000 genomes]
rs10254699	1.00[AMR][1000 genomes]
rs10257061	1.00[AMR][1000 genomes]
rs10266142	1.00[AMR][1000 genomes]
rs10275590	1.00[AMR][1000 genomes]
rs10277274	1.00[AMR][1000 genomes]
rs28588306	1.00[AMR][1000 genomes]
rs28816074	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888756	chr7:95937098-96343665	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv831064	chr7:96107530-96289042	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv532174	chr7:96221237-96375826	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96222200-96231800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:96227800-96229200	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr7:96227800-96229200	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr7:96227800-96229400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr7:96228200-96229400	Enhancers	Liver	Liver
6	chr7:96228400-96229600	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr7:96228600-96229800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:96228800-96229200	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr7:96228800-96229800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr7:96229000-96229200	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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