Variant report

Variant	rs10242346
Chromosome Location	chr7:96283871-96283872
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10215002	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10215114	1.00[AMR][1000 genomes]
rs10225229	1.00[AMR][1000 genomes]
rs10230464	1.00[AMR][1000 genomes]
rs10241325	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10253166	1.00[AMR][1000 genomes]
rs10253355	1.00[AMR][1000 genomes]
rs10254699	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10257061	1.00[AMR][1000 genomes]
rs10266142	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10275590	1.00[AMR][1000 genomes]
rs10277274	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28588306	1.00[AMR][1000 genomes]
rs28623221	1.00[AMR][1000 genomes]
rs28816074	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4733	1.00[YRI][hapmap];0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888756	chr7:95937098-96343665	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv831064	chr7:96107530-96289042	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv532174	chr7:96221237-96375826	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv831065	chr7:96275832-96436031	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96249800-96292800	Weak transcription	Left Ventricle	heart
2	chr7:96250200-96317400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr7:96258200-96299800	Weak transcription	Ovary	ovary
4	chr7:96266000-96301200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr7:96266600-96317000	Weak transcription	Right Ventricle	heart
6	chr7:96267600-96301400	Weak transcription	Aorta	Aorta
7	chr7:96272200-96301400	Weak transcription	Spleen	Spleen
8	chr7:96273600-96287000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr7:96277400-96285200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr7:96278400-96285600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:96278400-96301400	Weak transcription	Psoas Muscle	Psoas
12	chr7:96279800-96284000	Weak transcription	Lung	lung
13	chr7:96279800-96285400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:96281000-96286800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr7:96281200-96287000	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr7:96282200-96295200	Weak transcription	Brain Cingulate Gyrus	brain
17	chr7:96282600-96284200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr7:96283200-96293600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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