Variant report

Variant	rs1026639
Chromosome Location	chr6:114125632-114125633
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10214595	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1026637	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1026638	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1031799	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1031802	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1462380	1.00[AMR][1000 genomes]
rs1462383	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1527506	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1841744	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1903679	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2018969	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2348531	1.00[AMR][1000 genomes]
rs2615509	1.00[AMR][1000 genomes]
rs2615515	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2615516	0.93[AFR][1000 genomes]
rs2615517	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2615520	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2615527	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2615528	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2695453	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2695454	0.86[AFR][1000 genomes]
rs2753885	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2810178	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2810181	1.00[AMR][1000 genomes]
rs2810184	1.00[AMR][1000 genomes]
rs2810185	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2810186	1.00[AMR][1000 genomes]
rs2810190	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2810192	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2810193	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2810194	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2810197	1.00[AMR][1000 genomes]
rs352069	1.00[AMR][1000 genomes]
rs352072	1.00[AMR][1000 genomes]
rs352076	1.00[AMR][1000 genomes]
rs352088	1.00[AMR][1000 genomes]
rs352089	1.00[AMR][1000 genomes]
rs476354	1.00[AMR][1000 genomes]
rs508935	1.00[AMR][1000 genomes]
rs569246	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs574054	1.00[AMR][1000 genomes]
rs612475	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6568808	1.00[AMR][1000 genomes]
rs9372378	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9481397	1.00[AMR][1000 genomes]
rs9481399	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9481401	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9488261	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9488287	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	esv3363275	chr6:114101331-114302866	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114123200-114126200	Enhancers	Monocytes-CD14+_RO01746	blood
2	chr6:114124800-114126200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:114124800-114126600	Weak transcription	HepG2	liver
4	chr6:114125000-114132600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr6:114125200-114126000	Enhancers	GM12878-XiMat	blood
6	chr6:114125600-114126200	Enhancers	Primary B cells from cord blood	blood
7	chr6:114125600-114126600	Weak transcription	Fetal Muscle Leg	muscle
8	chr6:114125600-114132400	Enhancers	Primary B cells from peripheral blood	blood

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