Variant report

Variant	rs1903679
Chromosome Location	chr6:114154846-114154847
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10214595	1.00[AMR][1000 genomes]
rs1026637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1026638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1026639	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1031799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1031802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13437352	1.00[AMR][1000 genomes]
rs1462380	1.00[AMR][1000 genomes]
rs1462383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1527506	1.00[AMR][1000 genomes]
rs1841744	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2018969	1.00[AMR][1000 genomes]
rs2348531	1.00[AMR][1000 genomes]
rs2615509	1.00[AMR][1000 genomes]
rs2615515	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2615516	1.00[AFR][1000 genomes]
rs2615517	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2615520	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2615527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2615528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2695453	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2753885	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2810178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2810181	1.00[AMR][1000 genomes]
rs2810184	1.00[AMR][1000 genomes]
rs2810185	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2810186	1.00[AMR][1000 genomes]
rs2810190	1.00[AMR][1000 genomes]
rs2810192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2810193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2810194	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2810197	1.00[AMR][1000 genomes]
rs28679593	1.00[AMR][1000 genomes]
rs352069	1.00[AMR][1000 genomes]
rs352072	1.00[AMR][1000 genomes]
rs352076	1.00[AMR][1000 genomes]
rs352088	1.00[AMR][1000 genomes]
rs352089	1.00[AMR][1000 genomes]
rs476354	1.00[AMR][1000 genomes]
rs508935	1.00[AMR][1000 genomes]
rs569246	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs574054	1.00[AMR][1000 genomes]
rs612475	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6568808	1.00[AMR][1000 genomes]
rs9372378	1.00[AMR][1000 genomes]
rs9481397	1.00[AMR][1000 genomes]
rs9481399	1.00[AMR][1000 genomes]
rs9481401	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9481414	1.00[AMR][1000 genomes]
rs9488261	1.00[AMR][1000 genomes]
rs9488287	1.00[AMR][1000 genomes]
rs9488310	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	esv3363275	chr6:114101331-114302866	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114150600-114157200	Weak transcription	Pancreas	Pancrea
2	chr6:114151200-114158000	Weak transcription	Psoas Muscle	Psoas
3	chr6:114152600-114155000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:114154400-114156000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:114154600-114155600	Enhancers	Osteobl	bone
6	chr6:114154600-114155800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:114154800-114155000	Enhancers	NHLF	lung
8	chr6:114154800-114155200	Enhancers	Muscle Satellite Cultured Cells	--
9	chr6:114154800-114155200	Enhancers	GM12878-XiMat	blood
10	chr6:114154800-114155200	Enhancers	NHEK	skin
11	chr6:114154800-114155400	Enhancers	NH-A	brain
12	chr6:114154800-114155600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:114154800-114155600	Enhancers	NHDF-Ad	bronchial

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