Variant report

Variant	rs2615509
Chromosome Location	chr6:114142974-114142975
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10214595	1.00[AMR][1000 genomes]
rs1026637	1.00[AMR][1000 genomes]
rs1026638	1.00[AMR][1000 genomes]
rs1026639	1.00[AMR][1000 genomes]
rs1031799	1.00[AMR][1000 genomes]
rs1031802	1.00[AMR][1000 genomes]
rs13437352	1.00[AMR][1000 genomes]
rs1462380	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1462383	1.00[AMR][1000 genomes]
rs1527506	1.00[AMR][1000 genomes]
rs1841744	1.00[AMR][1000 genomes]
rs1903679	1.00[AMR][1000 genomes]
rs2018969	1.00[AMR][1000 genomes]
rs2348531	1.00[AMR][1000 genomes]
rs2615515	1.00[AMR][1000 genomes]
rs2615517	1.00[AMR][1000 genomes]
rs2615520	1.00[AMR][1000 genomes]
rs2615527	1.00[AMR][1000 genomes]
rs2615528	1.00[AMR][1000 genomes]
rs2695453	1.00[AMR][1000 genomes]
rs2753885	1.00[AMR][1000 genomes]
rs2810178	1.00[AMR][1000 genomes]
rs2810181	1.00[AMR][1000 genomes]
rs2810184	1.00[AMR][1000 genomes]
rs2810185	1.00[AMR][1000 genomes]
rs2810186	1.00[AMR][1000 genomes]
rs2810190	1.00[AMR][1000 genomes]
rs2810192	1.00[AMR][1000 genomes]
rs2810193	1.00[AMR][1000 genomes]
rs2810194	1.00[AMR][1000 genomes]
rs2810197	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28679593	1.00[AMR][1000 genomes]
rs352069	1.00[AMR][1000 genomes]
rs352072	1.00[AMR][1000 genomes]
rs352076	1.00[AMR][1000 genomes]
rs352088	1.00[AMR][1000 genomes]
rs352089	1.00[AMR][1000 genomes]
rs476354	1.00[AMR][1000 genomes]
rs508935	1.00[AMR][1000 genomes]
rs569246	1.00[AMR][1000 genomes]
rs574054	1.00[AMR][1000 genomes]
rs612475	1.00[AMR][1000 genomes]
rs6568808	1.00[AMR][1000 genomes]
rs9372378	1.00[AMR][1000 genomes]
rs9481397	1.00[AMR][1000 genomes]
rs9481399	1.00[AMR][1000 genomes]
rs9481401	1.00[AMR][1000 genomes]
rs9481414	1.00[AMR][1000 genomes]
rs9488261	1.00[AMR][1000 genomes]
rs9488287	1.00[AMR][1000 genomes]
rs9488310	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	esv3363275	chr6:114101331-114302866	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114134600-114146400	Weak transcription	Stomach Mucosa	stomach
2	chr6:114135600-114145600	Weak transcription	HSMM	muscle
3	chr6:114139400-114143800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:114140200-114145400	Weak transcription	Fetal Lung	lung
5	chr6:114141000-114145000	Weak transcription	Colon Smooth Muscle	Colon
6	chr6:114141200-114145800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr6:114141400-114145800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr6:114141400-114146800	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr6:114141400-114150200	Weak transcription	Fetal Intestine Large	intestine
10	chr6:114141600-114147200	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr6:114142400-114143000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:114142800-114143000	Enhancers	Psoas Muscle	Psoas
13	chr6:114142800-114145400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:114142800-114146600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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