Variant report

Variant	rs9481401
Chromosome Location	chr6:114168714-114168715
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:113995127..113997153-chr6:114168359..114171271,2	MCF-7	breast:
2	chr6:114167660..114169947-chr6:114174402..114176090,2	K562	blood:
3	chr6:114160840..114163426-chr6:114166969..114169378,2	K562	blood:

Variant related genes	Relation type
ENSG00000238563	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10214595	1.00[AMR][1000 genomes]
rs1026637	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1026638	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1026639	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1031799	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1031802	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13437352	1.00[AMR][1000 genomes]
rs1462380	1.00[AMR][1000 genomes]
rs1462383	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1527506	1.00[AMR][1000 genomes]
rs1841744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1903679	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2018969	1.00[AMR][1000 genomes]
rs2348531	1.00[AMR][1000 genomes]
rs2615509	1.00[AMR][1000 genomes]
rs2615515	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2615516	0.96[AFR][1000 genomes]
rs2615517	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2615520	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2615527	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2615528	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2695453	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2753885	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2810178	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2810181	1.00[AMR][1000 genomes]
rs2810184	1.00[AMR][1000 genomes]
rs2810185	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2810186	1.00[AMR][1000 genomes]
rs2810190	1.00[AMR][1000 genomes]
rs2810192	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2810193	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2810194	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2810197	1.00[AMR][1000 genomes]
rs28679593	1.00[AMR][1000 genomes]
rs352069	1.00[AMR][1000 genomes]
rs352072	1.00[AMR][1000 genomes]
rs352076	1.00[AMR][1000 genomes]
rs352088	1.00[AMR][1000 genomes]
rs352089	1.00[AMR][1000 genomes]
rs476354	1.00[AMR][1000 genomes]
rs508935	1.00[AMR][1000 genomes]
rs569246	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs574054	1.00[AMR][1000 genomes]
rs612475	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6568808	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs9372378	1.00[AMR][1000 genomes]
rs9481397	1.00[AMR][1000 genomes]
rs9481399	1.00[AMR][1000 genomes]
rs9481414	1.00[AMR][1000 genomes]
rs9488261	1.00[AMR][1000 genomes]
rs9488287	1.00[AMR][1000 genomes]
rs9488310	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	esv3363275	chr6:114101331-114302866	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114162000-114169600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:114164000-114175400	Weak transcription	Osteobl	bone
3	chr6:114166800-114168800	Enhancers	Dnd41	blood
4	chr6:114167000-114169800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:114167600-114174400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:114168000-114172600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:114168400-114169000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:114168400-114169000	Enhancers	NHDF-Ad	bronchial
9	chr6:114168600-114168800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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