Variant report

Variant	rs2615520
Chromosome Location	chr6:114113449-114113450
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10214595	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1026637	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1026638	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1026639	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1031799	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1031802	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1462380	1.00[AMR][1000 genomes]
rs1462383	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1527506	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1841744	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1903679	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2018969	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2348531	1.00[AMR][1000 genomes]
rs2615509	1.00[AMR][1000 genomes]
rs2615515	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2615516	0.89[AFR][1000 genomes]
rs2615517	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2615527	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2615528	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2695453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2695454	0.90[AFR][1000 genomes]
rs2753885	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2810178	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2810181	1.00[AMR][1000 genomes]
rs2810184	1.00[AMR][1000 genomes]
rs2810185	1.00[AMR][1000 genomes]
rs2810186	1.00[AMR][1000 genomes]
rs2810190	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2810192	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2810193	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2810194	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2810197	1.00[AMR][1000 genomes]
rs352069	1.00[AMR][1000 genomes]
rs352072	1.00[AMR][1000 genomes]
rs352076	1.00[AMR][1000 genomes]
rs352088	1.00[AMR][1000 genomes]
rs352089	1.00[AMR][1000 genomes]
rs476354	1.00[AMR][1000 genomes]
rs508935	1.00[AMR][1000 genomes]
rs569246	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs574054	1.00[AMR][1000 genomes]
rs612475	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6568808	1.00[AMR][1000 genomes]
rs9372378	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9481397	1.00[AMR][1000 genomes]
rs9481399	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9481401	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9488261	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9488287	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv464023	chr6:114071720-114114057	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	nsv604532	chr6:114071720-114114057	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
5	esv3363275	chr6:114101331-114302866	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114107200-114114000	Weak transcription	Pancreas	Pancrea
2	chr6:114108400-114116800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr6:114113200-114113800	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr6:114113200-114114000	Enhancers	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links