Variant report

Variant	rs1031802
Chromosome Location	chr6:114147387-114147388
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:114145475..114147514-chr6:114178396..114179980,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155130	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10214595	1.00[AMR][1000 genomes]
rs1026637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1026638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1026639	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1031799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13437352	1.00[AMR][1000 genomes]
rs1462380	1.00[AMR][1000 genomes]
rs1462383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1527506	1.00[AMR][1000 genomes]
rs1841744	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1903679	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2018969	1.00[AMR][1000 genomes]
rs2348531	1.00[AMR][1000 genomes]
rs2615509	1.00[AMR][1000 genomes]
rs2615515	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2615516	1.00[AFR][1000 genomes]
rs2615517	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2615520	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2615527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2615528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2695453	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2753885	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2810178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2810181	1.00[AMR][1000 genomes]
rs2810184	1.00[AMR][1000 genomes]
rs2810185	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2810186	1.00[AMR][1000 genomes]
rs2810190	1.00[AMR][1000 genomes]
rs2810192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2810193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2810194	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2810197	1.00[AMR][1000 genomes]
rs28679593	1.00[AMR][1000 genomes]
rs352069	1.00[AMR][1000 genomes]
rs352072	1.00[AMR][1000 genomes]
rs352076	1.00[AMR][1000 genomes]
rs352088	1.00[AMR][1000 genomes]
rs352089	1.00[AMR][1000 genomes]
rs476354	1.00[AMR][1000 genomes]
rs508935	1.00[AMR][1000 genomes]
rs569246	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs574054	1.00[AMR][1000 genomes]
rs612475	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6568808	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs9372378	1.00[AMR][1000 genomes]
rs9481397	1.00[AMR][1000 genomes]
rs9481399	1.00[AMR][1000 genomes]
rs9481401	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9481414	1.00[AMR][1000 genomes]
rs9488261	1.00[AMR][1000 genomes]
rs9488287	1.00[AMR][1000 genomes]
rs9488310	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	esv3363275	chr6:114101331-114302866	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114141400-114150200	Weak transcription	Fetal Intestine Large	intestine
2	chr6:114144400-114147800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr6:114144800-114147600	Enhancers	Rectal Smooth Muscle	rectum
4	chr6:114145000-114147400	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr6:114145000-114147400	Enhancers	Ovary	ovary
6	chr6:114145000-114147600	Enhancers	Brain Anterior Caudate	brain
7	chr6:114145000-114147800	Enhancers	Colon Smooth Muscle	Colon
8	chr6:114145000-114147800	Enhancers	Fetal Stomach	stomach
9	chr6:114145400-114147400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:114145400-114147400	Enhancers	HSMMtube	muscle
11	chr6:114145400-114147600	Enhancers	Brain Germinal Matrix	brain
12	chr6:114145400-114147600	Enhancers	Fetal Muscle Leg	muscle
13	chr6:114145600-114147400	Enhancers	Right Atrium	heart
14	chr6:114145600-114147800	Enhancers	Adipose Nuclei	Adipose
15	chr6:114145600-114148000	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr6:114145600-114148000	Enhancers	HSMM	muscle
17	chr6:114145800-114147400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:114145800-114147400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr6:114145800-114147400	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr6:114145800-114147600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:114145800-114147600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr6:114146000-114147400	Enhancers	Brain Substantia Nigra	brain
23	chr6:114146000-114147600	Enhancers	Osteobl	bone
24	chr6:114146000-114147800	Enhancers	Fetal Lung	lung
25	chr6:114146200-114147400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr6:114146200-114147600	Enhancers	NHLF	lung
27	chr6:114146400-114147400	Enhancers	Fetal Muscle Trunk	muscle
28	chr6:114146400-114147400	Enhancers	Right Ventricle	heart
29	chr6:114146400-114147400	Enhancers	Stomach Mucosa	stomach
30	chr6:114146400-114147800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr6:114146600-114147400	Enhancers	Brain Angular Gyrus	brain
32	chr6:114146600-114147400	Enhancers	Esophagus	oesophagus
33	chr6:114146600-114147400	Enhancers	Gastric	stomach
34	chr6:114146600-114147400	Enhancers	Psoas Muscle	Psoas
35	chr6:114146600-114147400	Flanking Active TSS	Stomach Smooth Muscle	stomach
36	chr6:114146600-114147600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr6:114146600-114147600	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr6:114146600-114147600	Enhancers	NHDF-Ad	bronchial
39	chr6:114146600-114147800	Enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr6:114146800-114147400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
41	chr6:114146800-114147400	Enhancers	Muscle Satellite Cultured Cells	--
42	chr6:114146800-114147400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr6:114146800-114147400	Enhancers	Colonic Mucosa	Colon
44	chr6:114146800-114147400	Enhancers	Duodenum Mucosa	Duodenum
45	chr6:114146800-114147400	Enhancers	Fetal Heart	heart
46	chr6:114146800-114147400	Enhancers	Rectal Mucosa Donor 29	rectum
47	chr6:114146800-114147400	Enhancers	Sigmoid Colon	Sigmoid Colon
48	chr6:114146800-114147400	Enhancers	Small Intestine	intestine
49	chr6:114146800-114147400	Enhancers	NH-A	brain
50	chr6:114147000-114147400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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