Variant report

Variant	rs10277802
Chromosome Location	chr7:103562551-103562552
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:103560989..103563112-chr7:103570075..103571747,2	K562	blood:
2	chr7:103562037..103563757-chr7:103575522..103577344,2	K562	blood:
3	chr7:103561421..103564064-chr7:103629667..103633796,3	K562	blood:

Variant related genes	Relation type
ENSG00000189056	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10231405	0.83[CHB][hapmap]
rs10231612	1.00[CEU][hapmap];0.80[MEX][hapmap]
rs10245317	0.81[CHB][hapmap]
rs10272697	0.83[CHB][hapmap]
rs10282622	1.00[CEU][hapmap]
rs10487175	1.00[CEU][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs12154742	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16872993	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16873008	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs2192304	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2192305	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2299401	0.83[CHB][hapmap]
rs2299402	1.00[CEU][hapmap]
rs2299403	0.83[CHB][hapmap]
rs3213725	1.00[CEU][hapmap]
rs41434053	0.82[CHB][hapmap]
rs55833200	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57179739	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58352612	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58751603	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59086068	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6465945	0.83[CHB][hapmap]
rs73712299	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73712300	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73712302	0.93[EUR][1000 genomes]
rs73715903	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73715905	0.80[EUR][1000 genomes]
rs73715906	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73715908	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73715910	0.80[EUR][1000 genomes]
rs756435	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7792066	0.83[CHB][hapmap];0.90[YRI][hapmap]
rs7797395	0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1843940	chr7:103421702-103590285	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv523466	chr7:103547135-103567525	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv933391	chr7:103557392-103588539	Weak transcription Flanking Active TSS Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv971218	chr7:103561948-103585213	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103556800-103574400	Weak transcription	HepG2	liver
2	chr7:103561600-103564400	Enhancers	K562	blood

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