Variant report

Variant	rs16872993
Chromosome Location	chr7:103561431-103561432
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:103559217..103561458-chr7:103602758..103604552,2	K562	blood:
2	chr7:103560989..103563112-chr7:103570075..103571747,2	K562	blood:
3	chr7:103559189..103561458-chr7:103602442..103604552,3	K562	blood:
4	chr7:103561421..103564064-chr7:103629667..103633796,3	K562	blood:
5	chr7:103557671..103561484-chr7:103568838..103571877,3	K562	blood:
6	chr7:103559557..103561954-chr7:103587104..103589097,2	K562	blood:

Variant related genes	Relation type
ENSG00000189056	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10231612	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs10277802	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10282622	1.00[CEU][hapmap];0.81[CHB][hapmap];0.88[JPT][hapmap]
rs10487175	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12154742	0.82[AMR][1000 genomes]
rs16873008	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16873053	0.88[JPT][hapmap]
rs2192304	1.00[CEU][hapmap]
rs2192305	1.00[CEU][hapmap];0.88[AMR][1000 genomes]
rs2299402	1.00[CEU][hapmap];0.87[JPT][hapmap]
rs3213725	1.00[CEU][hapmap];0.81[CHB][hapmap];0.88[JPT][hapmap]
rs55833200	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57179739	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58352612	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58751603	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59086068	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73712299	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73712300	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73712302	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73715903	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73715905	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73715906	0.82[AMR][1000 genomes]
rs73715908	0.82[AMR][1000 genomes]
rs73715910	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73715920	0.81[ASN][1000 genomes]
rs756435	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1843940	chr7:103421702-103590285	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv523466	chr7:103547135-103567525	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv933391	chr7:103557392-103588539	Weak transcription Flanking Active TSS Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103556800-103574400	Weak transcription	HepG2	liver
2	chr7:103558800-103561600	Flanking Active TSS	K562	blood

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