Variant report

Variant	rs10487175
Chromosome Location	chr7:103573146-103573147
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:103567609..103572378-chr7:103572884..103577140,9	K562	blood:
2	chr7:103558397..103560497-chr7:103570377..103574513,3	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10231612	1.00[CEU][hapmap];0.87[JPT][hapmap]
rs10277802	1.00[CEU][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs10282622	1.00[CEU][hapmap];0.87[JPT][hapmap]
rs12154742	0.93[EUR][1000 genomes]
rs16872993	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16873008	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16873053	0.84[CHB][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs17157475	0.84[CHB][hapmap];0.85[CHD][hapmap];0.83[ASN][1000 genomes]
rs2192304	1.00[CEU][hapmap]
rs2192305	1.00[CEU][hapmap]
rs2299402	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs3213725	1.00[CEU][hapmap];0.87[JPT][hapmap];0.81[AMR][1000 genomes]
rs55833200	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57179739	0.80[EUR][1000 genomes]
rs58352612	0.80[EUR][1000 genomes]
rs58751603	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59086068	0.80[EUR][1000 genomes]
rs73712299	0.80[EUR][1000 genomes]
rs73712300	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73712302	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73715903	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73715905	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73715906	0.93[EUR][1000 genomes]
rs73715908	0.93[EUR][1000 genomes]
rs73715910	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73715920	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73715922	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1843940	chr7:103421702-103590285	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv933391	chr7:103557392-103588539	Weak transcription Flanking Active TSS Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv971218	chr7:103561948-103585213	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103556800-103574400	Weak transcription	HepG2	liver
2	chr7:103572200-103574000	Weak transcription	K562	blood

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