Variant report
| Variant | rs73715903 |
|---|---|
| Chromosome Location | chr7:103564518-103564519 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:103532058..103533775-chr7:103563141..103565632,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10277802 | 0.92[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs10487175 | 1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12154742 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs16872993 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16873008 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2192305 | 0.88[AMR][1000 genomes] |
| rs55833200 | 0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57179739 | 0.92[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs58352612 | 0.92[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs58751603 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59086068 | 0.92[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs73712299 | 0.90[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs73712300 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73712302 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73715905 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73715906 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs73715908 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs73715910 | 1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs73715920 | 0.93[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs73715922 | 0.93[EUR][1000 genomes] |
| rs756435 | 0.80[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1843940 | chr7:103421702-103590285 | Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv523466 | chr7:103547135-103567525 | Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv933391 | chr7:103557392-103588539 | Weak transcription Flanking Active TSS Enhancers Strong transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv971218 | chr7:103561948-103585213 | Weak transcription Enhancers Strong transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:103556800-103574400 | Weak transcription | HepG2 | liver |
| 2 | chr7:103564400-103564800 | Weak transcription | K562 | blood |
