Variant report

No.	Distal block	Cell Line	Cell type
1	chr9:72425660..72428855-chr9:72433603..72435458,3	K562	blood:
2	chr9:72420075..72423199-chr9:72424898..72428834,6	K562	blood:
3	chr9:72113417..72115409-chr9:72425666..72428097,2	K562	blood:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1004487	0.89[CHB][hapmap];0.83[ASN][1000 genomes]
rs10123781	0.84[CHB][hapmap];0.88[CHD][hapmap];0.83[ASN][1000 genomes]
rs10780678	0.82[ASN][1000 genomes]
rs10868150	0.85[ASN][1000 genomes]
rs11140334	0.85[ASN][1000 genomes]
rs11140360	0.97[ASN][1000 genomes]
rs11140362	0.97[ASN][1000 genomes]
rs11140368	0.97[ASN][1000 genomes]
rs11140527	0.85[ASN][1000 genomes]
rs11140621	0.83[ASN][1000 genomes]
rs11791776	0.95[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs11793213	0.90[ASN][1000 genomes]
rs11793793	0.88[ASN][1000 genomes]
rs12235751	0.84[ASN][1000 genomes]
rs17085361	0.84[ASN][1000 genomes]
rs2150048	0.97[ASN][1000 genomes]
rs2183380	0.95[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs2282070	0.95[CHB][hapmap];0.93[CHD][hapmap];0.84[JPT][hapmap];0.89[ASN][1000 genomes]
rs3949763	0.94[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs4458931	0.95[CHB][hapmap];0.92[CHD][hapmap];0.85[ASN][1000 genomes]
rs4744940	0.81[ASN][1000 genomes]
rs4744941	0.93[ASN][1000 genomes]
rs60429826	0.93[ASN][1000 genomes]
rs7023103	0.95[CHB][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs72723210	0.93[ASN][1000 genomes]
rs72723211	0.93[ASN][1000 genomes]
rs9792493	0.94[CHB][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050920	chr9:72345297-72579301	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831611	chr9:72361905-72512134	Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72424800-72435200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:72425600-72428200	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr9:72425800-72428200	Enhancers	K562	blood
4	chr9:72426800-72428200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:72427000-72431200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr9:72427200-72428200	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr9:72427600-72428200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr9:72427600-72428200	Enhancers	Fetal Lung	lung
9	chr9:72427800-72428200	Enhancers	Fetal Heart	heart
10	chr9:72428000-72428200	Enhancers	Adipose Nuclei	Adipose
11	chr9:72428000-72428400	Enhancers	Pancreatic Islets	Pancreatic Islet

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