Variant report

Variant	rs2183380
Chromosome Location	chr9:72425204-72425205
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:72424745..72427751-chr9:72433882..72436970,3	K562	blood:
2	chr9:72420075..72423199-chr9:72424898..72428834,6	K562	blood:
3	chr9:72424636..72427115-chr9:72431356..72433348,2	K562	blood:
4	chr9:72372528..72377286-chr9:72423257..72427647,6	K562	blood:
5	chr9:72424618..72427115-chr9:72429940..72433348,3	K562	blood:

Variant related genes	Relation type
ENSG00000204711	Chromatin interaction
ENSG00000225626	Chromatin interaction
ENSG00000188647	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1004487	0.93[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];0.81[YRI][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10123781	0.86[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.96[TSI][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10283871	0.93[ASN][1000 genomes]
rs10780678	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10868150	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11140334	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11140360	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11140362	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11140368	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11140527	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11140621	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11140722	0.93[CEU][hapmap];0.83[TSI][hapmap]
rs11791776	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11792259	0.85[CEU][hapmap];0.81[MEX][hapmap]
rs11793213	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11793793	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12235751	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17085361	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2150048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2282070	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3949763	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4458931	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.81[YRI][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4744940	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4744941	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60429826	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7023103	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.81[YRI][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7042897	0.86[CEU][hapmap];0.81[MEX][hapmap]
rs72723210	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72723211	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7869694	0.93[CEU][hapmap];0.83[TSI][hapmap]
rs9792493	0.86[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050920	chr9:72345297-72579301	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831611	chr9:72361905-72512134	Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72421600-72426000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr9:72421600-72426600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr9:72421600-72427400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr9:72421800-72426000	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr9:72422200-72425800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr9:72422400-72425800	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr9:72422400-72425800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr9:72422400-72427600	Weak transcription	Fetal Lung	lung
9	chr9:72424800-72435200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr9:72425000-72425400	Enhancers	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links