Variant report

Variant	rs1035804
Chromosome Location	chr4:175372799-175372800
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11133039	0.88[ASN][1000 genomes]
rs11725050	0.95[ASN][1000 genomes]
rs11930740	0.85[ASN][1000 genomes]
rs12642478	0.95[ASN][1000 genomes]
rs12643801	0.91[ASN][1000 genomes]
rs12644593	0.95[ASN][1000 genomes]
rs12645224	0.85[ASN][1000 genomes]
rs12646844	0.91[ASN][1000 genomes]
rs1365611	0.95[ASN][1000 genomes]
rs1365612	0.95[ASN][1000 genomes]
rs1426941	0.91[ASN][1000 genomes]
rs17293172	0.95[ASN][1000 genomes]
rs17293403	0.94[ASN][1000 genomes]
rs1820520	0.95[ASN][1000 genomes]
rs2244093	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2244289	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2332897	0.95[ASN][1000 genomes]
rs2555622	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2555623	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2612658	0.81[CEU][hapmap]
rs2612662	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2612663	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2612679	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4613542	0.87[ASN][1000 genomes]
rs56808147	0.85[ASN][1000 genomes]
rs58959177	0.91[ASN][1000 genomes]
rs62337117	0.83[ASN][1000 genomes]
rs62337119	0.89[ASN][1000 genomes]
rs6553794	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6553795	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6553796	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6813684	0.95[ASN][1000 genomes]
rs6814296	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7673142	0.95[ASN][1000 genomes]
rs930025	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175368800-175374800	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr4:175369200-175374800	Enhancers	Rectal Smooth Muscle	rectum
3	chr4:175369400-175373000	Enhancers	Stomach Mucosa	stomach
4	chr4:175369400-175373800	Enhancers	Colon Smooth Muscle	Colon
5	chr4:175370000-175373200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr4:175370000-175373600	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr4:175370600-175374200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr4:175370800-175373200	Enhancers	Hela-S3	cervix
9	chr4:175371000-175373800	Enhancers	A549	lung
10	chr4:175371000-175378400	Weak transcription	Esophagus	oesophagus
11	chr4:175371200-175373000	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr4:175371400-175374200	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr4:175371400-175374600	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr4:175371400-175374600	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr4:175371600-175372800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr4:175371600-175373000	Weak transcription	Fetal Stomach	stomach
17	chr4:175371800-175374600	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr4:175371800-175382600	Weak transcription	Small Intestine	intestine
19	chr4:175372000-175372800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr4:175372000-175373200	Weak transcription	Fetal Intestine Large	intestine
21	chr4:175372000-175373200	Weak transcription	Fetal Intestine Small	intestine
22	chr4:175372000-175373800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr4:175372000-175377200	Weak transcription	Stomach Smooth Muscle	stomach
24	chr4:175372200-175373000	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr4:175372400-175374400	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr4:175372400-175374600	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr4:175372600-175374400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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