Variant report

Variant	rs2612662
Chromosome Location	chr4:175374709-175374710
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1035804	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11133039	0.86[ASN][1000 genomes]
rs11725050	0.94[ASN][1000 genomes]
rs11930740	0.84[ASN][1000 genomes]
rs12642478	0.93[ASN][1000 genomes]
rs12643801	0.89[ASN][1000 genomes]
rs12644593	0.93[ASN][1000 genomes]
rs12645224	0.83[ASN][1000 genomes]
rs12646844	0.89[ASN][1000 genomes]
rs1365611	0.93[ASN][1000 genomes]
rs1365612	0.93[ASN][1000 genomes]
rs1426941	0.89[ASN][1000 genomes]
rs17293172	0.93[ASN][1000 genomes]
rs17293403	0.92[ASN][1000 genomes]
rs1820520	0.93[ASN][1000 genomes]
rs2244093	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2244289	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2332897	0.93[ASN][1000 genomes]
rs2555622	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2555623	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2612663	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2612679	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4613542	0.85[ASN][1000 genomes]
rs56808147	0.84[ASN][1000 genomes]
rs58959177	0.89[ASN][1000 genomes]
rs62337117	0.82[ASN][1000 genomes]
rs62337119	0.88[ASN][1000 genomes]
rs6553794	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6553795	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6553796	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6813684	0.93[ASN][1000 genomes]
rs6814296	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7673142	0.93[ASN][1000 genomes]
rs930025	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175368800-175374800	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr4:175369200-175374800	Enhancers	Rectal Smooth Muscle	rectum
3	chr4:175371000-175378400	Weak transcription	Esophagus	oesophagus
4	chr4:175371800-175382600	Weak transcription	Small Intestine	intestine
5	chr4:175372000-175377200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr4:175373600-175375200	Enhancers	Fetal Stomach	stomach
7	chr4:175373800-175376000	Weak transcription	Colon Smooth Muscle	Colon
8	chr4:175374000-175377800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr4:175374200-175376000	Weak transcription	Fetal Intestine Small	intestine
10	chr4:175374200-175378800	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr4:175374400-175374800	Enhancers	A549	lung
12	chr4:175374400-175377800	Weak transcription	Stomach Mucosa	stomach
13	chr4:175374600-175375200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr4:175374600-175382800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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