Variant report

Variant	rs930025
Chromosome Location	chr4:175382583-175382584
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:175382303..175382999-chr4:175390597..175391152,2	MCF-7	breast:
2	chr4:175381430..175384329-chr4:175386718..175390657,4	K562	blood:
3	chr4:175382002..175384329-chr4:175387134..175389355,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1035804	0.95[ASN][1000 genomes]
rs11133039	0.84[ASN][1000 genomes]
rs11725050	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11930740	0.82[ASN][1000 genomes]
rs12642478	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12643801	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12644593	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12645224	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12646844	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1365611	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1365612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1426941	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17293172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17293403	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1820520	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2244093	0.95[ASN][1000 genomes]
rs2244289	0.88[ASN][1000 genomes]
rs2332897	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2555622	0.95[ASN][1000 genomes]
rs2555623	0.95[ASN][1000 genomes]
rs2612662	0.93[ASN][1000 genomes]
rs2612663	0.95[ASN][1000 genomes]
rs2612679	0.95[ASN][1000 genomes]
rs4613542	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56808147	0.82[ASN][1000 genomes]
rs58959177	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62337117	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62337119	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6553794	0.90[ASN][1000 genomes]
rs6553795	0.90[ASN][1000 genomes]
rs6553796	0.90[ASN][1000 genomes]
rs6813684	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6814296	0.90[ASN][1000 genomes]
rs7673142	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175371800-175382600	Weak transcription	Small Intestine	intestine
2	chr4:175374600-175382800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr4:175381200-175383600	Enhancers	Hela-S3	cervix
4	chr4:175381400-175382800	Enhancers	Muscle Satellite Cultured Cells	--
5	chr4:175381400-175383200	Enhancers	Colon Smooth Muscle	Colon
6	chr4:175381400-175383600	Enhancers	HepG2	liver
7	chr4:175381600-175383400	Enhancers	NH-A	brain
8	chr4:175381600-175383600	Enhancers	Fetal Intestine Large	intestine
9	chr4:175381600-175383600	Enhancers	Fetal Intestine Small	intestine
10	chr4:175381600-175383600	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr4:175382000-175382600	Weak transcription	Stomach Mucosa	stomach
12	chr4:175382400-175383000	Enhancers	Duodenum Mucosa	Duodenum
13	chr4:175382400-175383000	Enhancers	Pancreatic Islets	Pancreatic Islet
14	chr4:175382400-175383200	Enhancers	Gastric	stomach
15	chr4:175382400-175383600	Flanking Active TSS	A549	lung

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