Variant report

Variant	rs2555622
Chromosome Location	chr4:175376440-175376441
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1035804	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11133039	0.88[ASN][1000 genomes]
rs11725050	0.95[ASN][1000 genomes]
rs11930740	0.85[ASN][1000 genomes]
rs12642478	0.95[ASN][1000 genomes]
rs12643801	0.91[ASN][1000 genomes]
rs12644593	0.95[ASN][1000 genomes]
rs12645224	0.85[ASN][1000 genomes]
rs12646844	0.91[ASN][1000 genomes]
rs1365611	0.95[ASN][1000 genomes]
rs1365612	0.95[ASN][1000 genomes]
rs1426941	0.91[ASN][1000 genomes]
rs17293172	0.95[ASN][1000 genomes]
rs17293403	0.94[ASN][1000 genomes]
rs1820520	0.95[ASN][1000 genomes]
rs2244093	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2244289	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2332897	0.95[ASN][1000 genomes]
rs2555623	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2612662	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2612663	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2612679	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4613542	0.87[ASN][1000 genomes]
rs56808147	0.85[ASN][1000 genomes]
rs58959177	0.91[ASN][1000 genomes]
rs62337117	0.83[ASN][1000 genomes]
rs62337119	0.89[ASN][1000 genomes]
rs6553794	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6553795	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6553796	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6813684	0.95[ASN][1000 genomes]
rs6814296	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7673142	0.95[ASN][1000 genomes]
rs930025	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	esv3361753	chr4:175375852-175377950	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv3371560	chr4:175376377-175377425	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175371000-175378400	Weak transcription	Esophagus	oesophagus
2	chr4:175371800-175382600	Weak transcription	Small Intestine	intestine
3	chr4:175372000-175377200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr4:175374000-175377800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr4:175374200-175378800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr4:175374400-175377800	Weak transcription	Stomach Mucosa	stomach
7	chr4:175374600-175382800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr4:175374800-175377000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr4:175375200-175377000	Weak transcription	Fetal Stomach	stomach
10	chr4:175376000-175376600	Enhancers	Fetal Intestine Small	intestine
11	chr4:175376000-175379400	Enhancers	Colon Smooth Muscle	Colon
12	chr4:175376200-175378800	Weak transcription	Pancreas	Pancrea
13	chr4:175376400-175381600	Weak transcription	Rectal Mucosa Donor 31	rectum

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