Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:44816445..44819048-chr19:45004238..45006383,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000167384	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10404742	1.00[EUR][1000 genomes]
rs10408954	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10411672	1.00[EUR][1000 genomes]
rs10418545	1.00[EUR][1000 genomes]
rs10420704	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10423950	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16978899	1.00[EUR][1000 genomes]
rs35932898	1.00[EUR][1000 genomes]
rs4449053	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58005257	1.00[EUR][1000 genomes]
rs7246523	1.00[EUR][1000 genomes]
rs7259775	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73553262	1.00[EUR][1000 genomes]
rs73553269	1.00[EUR][1000 genomes]
rs73553273	1.00[EUR][1000 genomes]
rs73553283	1.00[EUR][1000 genomes]
rs73553293	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73553294	1.00[EUR][1000 genomes]
rs73555129	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73555130	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3318935	chr19:44813543-44819319	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv3318936	chr19:44813543-44819319	Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3330033	chr19:44813552-44819322	Weak transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44814600-44824600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr19:44818000-44819000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum

Quick Search: