Variant report

Variant	rs35932898
Chromosome Location	chr19:44792697-44792698
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:44791055..44792864-chr19:44796780..44798588,2	K562	blood:
2	chr19:44788129..44789786-chr19:44790897..44793362,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10403199	1.00[EUR][1000 genomes]
rs10404742	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10408954	1.00[EUR][1000 genomes]
rs10411672	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10418545	1.00[EUR][1000 genomes]
rs10420704	1.00[EUR][1000 genomes]
rs10423950	1.00[EUR][1000 genomes]
rs16978899	1.00[EUR][1000 genomes]
rs4449053	1.00[EUR][1000 genomes]
rs58005257	1.00[EUR][1000 genomes]
rs7246523	1.00[EUR][1000 genomes]
rs7259775	1.00[EUR][1000 genomes]
rs73553262	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73553269	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73553273	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73553283	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73553293	1.00[EUR][1000 genomes]
rs73553294	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73555129	1.00[EUR][1000 genomes]
rs73555130	1.00[EUR][1000 genomes]

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44777000-44807000	ZNF genes & repeats	Liver	Liver
2	chr19:44781800-44801400	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr19:44783200-44804400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr19:44785200-44801600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
5	chr19:44788000-44799800	Weak transcription	HepG2	liver
6	chr19:44788200-44801600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
7	chr19:44788800-44795400	ZNF genes & repeats	Stomach Smooth Muscle	stomach
8	chr19:44790000-44793800	Strong transcription	Skeletal Muscle Female	skeletal muscle
9	chr19:44790000-44795200	ZNF genes & repeats	Fetal Muscle Leg	muscle
10	chr19:44790000-44801600	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
11	chr19:44790400-44794800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr19:44790400-44806800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr19:44790400-44808400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr19:44790600-44795400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
15	chr19:44790600-44801200	Weak transcription	NHLF	lung
16	chr19:44790800-44793600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr19:44790800-44795000	ZNF genes & repeats	Colon Smooth Muscle	Colon
18	chr19:44790800-44797400	ZNF genes & repeats	Fetal Lung	lung
19	chr19:44790800-44798400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr19:44791000-44792800	ZNF genes & repeats	HSMM	muscle
21	chr19:44791000-44794000	Strong transcription	Brain Anterior Caudate	brain
22	chr19:44791000-44794400	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr19:44791000-44794400	ZNF genes & repeats	Brain Germinal Matrix	brain
24	chr19:44791000-44794600	ZNF genes & repeats	Primary B cells from cord blood	blood
25	chr19:44791000-44794800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr19:44791000-44795000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
27	chr19:44791000-44795000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
28	chr19:44791000-44795000	ZNF genes & repeats	Left Ventricle	heart
29	chr19:44791000-44795400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
30	chr19:44791000-44795400	Strong transcription	Cortex derived primary cultured neurospheres	brain
31	chr19:44791000-44795400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr19:44791000-44799600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
33	chr19:44791000-44800200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
34	chr19:44791200-44792800	ZNF genes & repeats	Brain Substantia Nigra	brain
35	chr19:44791200-44792800	ZNF genes & repeats	Pancreas	Pancrea
36	chr19:44791200-44793200	ZNF genes & repeats	A549	lung
37	chr19:44791200-44793400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
38	chr19:44791200-44793400	ZNF genes & repeats	Psoas Muscle	Psoas
39	chr19:44791200-44793600	Strong transcription	HUES6 Cell Line	embryonic stem cell
40	chr19:44791200-44793800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
41	chr19:44791200-44794200	Strong transcription	Brain Inferior Temporal Lobe	brain
42	chr19:44791200-44794600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr19:44791200-44794600	ZNF genes & repeats	Primary T cells from cord blood	blood
44	chr19:44791200-44794800	Strong transcription	Placenta	Placenta
45	chr19:44791200-44794800	Strong transcription	Right Ventricle	heart
46	chr19:44791200-44795000	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
47	chr19:44791200-44795000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr19:44791200-44795000	ZNF genes & repeats	Aorta	Aorta
49	chr19:44791200-44795000	Strong transcription	Placenta Amnion	Placenta Amnion
50	chr19:44791200-44795200	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood

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