The 2.0 version of rSNPBase

Variant report

Variant rs73553294
Chromosome Location chr19:44808273-44808274
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:127 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:44790400-44808400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr19:44792800-44808400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr19:44804000-44808400 Weak transcription Esophagus oesophagus
4 chr19:44804400-44808400 Weak transcription Right Ventricle heart
5 chr19:44804400-44808600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
6 chr19:44804400-44808600 Weak transcription Spleen Spleen
7 chr19:44804600-44808400 Weak transcription Colonic Mucosa Colon
8 chr19:44805600-44808400 Weak transcription Primary T cells fromperipheralblood blood
9 chr19:44806000-44808400 Weak transcription Gastric stomach
10 chr19:44806000-44808400 Weak transcription Lung lung
11 chr19:44806800-44808400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
12 chr19:44806800-44808400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
13 chr19:44806800-44808400 Weak transcription Left Ventricle heart
14 chr19:44807000-44808400 Weak transcription Aorta Aorta
15 chr19:44807000-44808400 Weak transcription Pancreas Pancrea
16 chr19:44807200-44808400 Weak transcription Ovary ovary
17 chr19:44807400-44808400 Flanking Active TSS H9 Derived Neuron Cultured Cells ES cell derived
18 chr19:44807400-44808400 Flanking Active TSS GM12878-XiMat blood
19 chr19:44807400-44808600 Enhancers Small Intestine intestine
20 chr19:44807400-44809800 Active TSS HUES64 Cell Line embryonic stem cell
21 chr19:44807600-44808400 Enhancers Primary T helper naive cells from peripheral blood blood
22 chr19:44807600-44808400 Enhancers Primary T helper naive cells fromperipheralblood blood
23 chr19:44807600-44808400 Enhancers Primary T killer naive cells fromperipheralblood blood
24 chr19:44807600-44808400 Flanking Active TSS Brain Anterior Caudate brain
25 chr19:44807600-44808400 Flanking Active TSS Brain Inferior Temporal Lobe brain
26 chr19:44807600-44808400 Flanking Active TSS Rectal Smooth Muscle rectum
27 chr19:44807600-44808400 Flanking Active TSS NH-A brain
28 chr19:44807600-44808600 Enhancers Primary T helper 17 cells PMA-I stimulated --
29 chr19:44807600-44808600 Flanking Active TSS Adipose Nuclei Adipose
30 chr19:44807600-44808600 Flanking Active TSS Fetal Lung lung
31 chr19:44807600-44808600 Enhancers Placenta Amnion Placenta Amnion
32 chr19:44807600-44808800 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
33 chr19:44807600-44809200 Active TSS iPS DF 19.11 Cell Line embryonic stem cell
34 chr19:44807600-44809600 Active TSS A549 lung
35 chr19:44807600-44809800 Active TSS HUES48 Cell Line embryonic stem cell
36 chr19:44807600-44809800 Active TSS Psoas Muscle Psoas
37 chr19:44807600-44810600 Active TSS Duodenum Smooth Muscle Duodenum
38 chr19:44807800-44808400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
39 chr19:44807800-44808400 Enhancers ES-UCSF4 Cell Line embryonic stem cell
40 chr19:44807800-44808400 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
41 chr19:44807800-44808400 Enhancers Primary neutrophils fromperipheralblood blood
42 chr19:44807800-44808400 Enhancers Primary B cells from peripheral blood blood
43 chr19:44807800-44808400 Enhancers Primary T killer memory cells from peripheral blood blood
44 chr19:44807800-44808400 Flanking Active TSS Muscle Satellite Cultured Cells --
45 chr19:44807800-44808400 Flanking Active TSS Foreskin Melanocyte Primary Cells skin03 Skin
46 chr19:44807800-44808400 Weak transcription Placenta Placenta
47 chr19:44807800-44808400 Weak transcription Fetal Thymus thymus
48 chr19:44807800-44808400 Enhancers Sigmoid Colon Sigmoid Colon
49 chr19:44807800-44808400 Flanking Active TSS Stomach Smooth Muscle stomach
50 chr19:44807800-44808400 Flanking Active TSS HepG2 liver

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Last update: Aug 31, 2015