Variant report

Variant	rs16978899
Chromosome Location	chr19:44777552-44777553
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:44764212..44765954-chr19:44776988..44779803,2	MCF-7	breast:

rs_ID	r²[population]
rs10403199	1.00[EUR][1000 genomes]
rs10404742	1.00[EUR][1000 genomes]
rs10408954	1.00[EUR][1000 genomes]
rs10411672	1.00[EUR][1000 genomes]
rs10418545	1.00[EUR][1000 genomes]
rs10420704	1.00[EUR][1000 genomes]
rs10423950	1.00[EUR][1000 genomes]
rs35932898	1.00[EUR][1000 genomes]
rs4449053	1.00[EUR][1000 genomes]
rs58005257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7246523	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7259775	1.00[EUR][1000 genomes]
rs73553262	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73553269	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73553273	1.00[EUR][1000 genomes]
rs73553283	1.00[EUR][1000 genomes]
rs73553293	1.00[EUR][1000 genomes]
rs73553294	1.00[EUR][1000 genomes]
rs73555129	1.00[EUR][1000 genomes]
rs73555130	1.00[EUR][1000 genomes]

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44764600-44778200	Weak transcription	HSMMtube	muscle
2	chr19:44764800-44777600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr19:44764800-44777600	Weak transcription	Placenta	Placenta
4	chr19:44764800-44782000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr19:44765000-44777600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr19:44765000-44777600	Weak transcription	Right Ventricle	heart
7	chr19:44765000-44778000	Weak transcription	Fetal Brain Male	brain
8	chr19:44765200-44777600	Weak transcription	Dnd41	blood
9	chr19:44765400-44777600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr19:44770000-44780800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr19:44770600-44777600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr19:44771000-44777600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr19:44771400-44777600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr19:44771400-44777600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr19:44771400-44778200	Weak transcription	Fetal Kidney	kidney
16	chr19:44771600-44777600	Weak transcription	Thymus	Thymus
17	chr19:44772200-44777600	Weak transcription	Left Ventricle	heart
18	chr19:44772800-44777600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr19:44773000-44778000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr19:44775000-44777600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr19:44775000-44777600	Weak transcription	Fetal Stomach	stomach
22	chr19:44775000-44791200	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr19:44775200-44777600	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr19:44775200-44778200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr19:44776800-44779400	ZNF genes & repeats	Primary T cells from cord blood	blood
26	chr19:44776800-44784000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
27	chr19:44777000-44778800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
28	chr19:44777000-44778800	ZNF genes & repeats	Colon Smooth Muscle	Colon
29	chr19:44777000-44779000	ZNF genes & repeats	Fetal Lung	lung
30	chr19:44777000-44779200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
31	chr19:44777000-44781000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr19:44777000-44807000	ZNF genes & repeats	Liver	Liver
33	chr19:44777200-44778000	ZNF genes & repeats	Fetal Intestine Large	intestine
34	chr19:44777200-44778600	Strong transcription	Fetal Muscle Trunk	muscle
35	chr19:44777200-44778800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr19:44777200-44778800	ZNF genes & repeats	Brain Germinal Matrix	brain
37	chr19:44777200-44778800	ZNF genes & repeats	Brain Hippocampus Middle	brain
38	chr19:44777200-44778800	ZNF genes & repeats	Fetal Muscle Leg	muscle
39	chr19:44777200-44778800	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
40	chr19:44777200-44779200	ZNF genes & repeats	Stomach Smooth Muscle	stomach
41	chr19:44777200-44780800	ZNF genes & repeats	Adipose Nuclei	Adipose
42	chr19:44777400-44778000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr19:44777400-44778000	Strong transcription	Brain Angular Gyrus	brain
44	chr19:44777400-44778000	ZNF genes & repeats	Brain Substantia Nigra	brain
45	chr19:44777400-44778400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr19:44777400-44778400	ZNF genes & repeats	Brain Anterior Caudate	brain
47	chr19:44777400-44778400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr19:44777400-44778400	Strong transcription	Fetal Heart	heart
49	chr19:44777400-44778600	ZNF genes & repeats	Spleen	Spleen
50	chr19:44777400-44778800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell

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