Variant report

Variant	rs73553269
Chromosome Location	chr19:44783246-44783247
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10403199	1.00[EUR][1000 genomes]
rs10404742	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10408954	1.00[EUR][1000 genomes]
rs10411672	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10418545	1.00[EUR][1000 genomes]
rs10420704	1.00[EUR][1000 genomes]
rs10423950	1.00[EUR][1000 genomes]
rs16978899	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35932898	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4449053	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58005257	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7246523	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7259775	1.00[EUR][1000 genomes]
rs73553262	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73553273	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73553283	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73553293	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73553294	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73555129	1.00[EUR][1000 genomes]
rs73555130	1.00[EUR][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44775000-44791200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr19:44776800-44784000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
3	chr19:44777000-44807000	ZNF genes & repeats	Liver	Liver
4	chr19:44778600-44787000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr19:44778800-44784800	Weak transcription	Right Ventricle	heart
6	chr19:44778800-44791000	Weak transcription	Fetal Heart	heart
7	chr19:44778800-44791000	Weak transcription	HSMMtube	muscle
8	chr19:44778800-44791400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr19:44779200-44783400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr19:44779200-44789200	Weak transcription	Brain Angular Gyrus	brain
11	chr19:44779400-44791000	Weak transcription	Dnd41	blood
12	chr19:44780600-44783400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr19:44780600-44784600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr19:44781400-44783600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr19:44781400-44784600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr19:44781600-44783400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
17	chr19:44781800-44784000	Weak transcription	Esophagus	oesophagus
18	chr19:44781800-44801400	ZNF genes & repeats	Adipose Nuclei	Adipose
19	chr19:44782000-44787000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr19:44782200-44783600	Enhancers	NHDF-Ad	bronchial
21	chr19:44782600-44783600	Enhancers	NHEK	skin
22	chr19:44782600-44786600	Weak transcription	HMEC	breast
23	chr19:44782800-44791400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr19:44782800-44792000	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr19:44783000-44786600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr19:44783200-44791400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr19:44783200-44804400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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