Variant report

Variant	rs10418635
Chromosome Location	chr19:57037606-57037607
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10403034	0.84[EUR][1000 genomes]
rs10405130	0.86[EUR][1000 genomes]
rs10405534	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10407163	0.84[EUR][1000 genomes]
rs10408508	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10413931	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10415931	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10417351	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10422564	0.80[CEU][hapmap];0.82[JPT][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10423617	0.87[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13346710	0.85[EUR][1000 genomes]
rs17207495	0.87[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2058131	0.87[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2286420	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34136271	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3752177	0.84[EUR][1000 genomes]
rs73055319	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73055321	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73068034	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73068037	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73068061	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73070034	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73070060	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73070074	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73070077	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73070080	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949121	chr19:56754719-57591038	ZNF genes & repeats Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv1062341	chr19:56794070-57273332	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
3	nsv544094	chr19:56794070-57273332	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
4	nsv1056713	chr19:56799151-57265682	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
5	nsv544095	chr19:56799151-57265682	Strong transcription ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
6	nsv580385	chr19:56918598-57072433	ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
7	nsv1057240	chr19:56919831-57153659	Flanking Active TSS Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
8	nsv544097	chr19:56919831-57153659	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
9	nsv580386	chr19:56924761-57072433	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
10	nsv1055357	chr19:56933632-57190007	ZNF genes & repeats Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
11	nsv912518	chr19:56995737-57109821	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
12	nsv912519	chr19:57020754-57065189	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
13	nsv580387	chr19:57026396-57040070	Strong transcription ZNF genes & repeats Weak transcription	lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:57022600-57042800	ZNF genes & repeats	Liver	Liver
2	chr19:57022800-57049200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr19:57024400-57038800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr19:57025600-57038200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr19:57025600-57049200	ZNF genes & repeats	Adipose Nuclei	Adipose
6	chr19:57026000-57040200	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
7	chr19:57027200-57038600	ZNF genes & repeats	Ovary	ovary
8	chr19:57027400-57040800	ZNF genes & repeats	Brain Hippocampus Middle	brain
9	chr19:57029000-57039200	ZNF genes & repeats	Left Ventricle	heart
10	chr19:57029000-57041600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr19:57029200-57041000	ZNF genes & repeats	Brain Cingulate Gyrus	brain
12	chr19:57029200-57042600	ZNF genes & repeats	Brain Substantia Nigra	brain
13	chr19:57029400-57037800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
14	chr19:57029600-57038200	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
15	chr19:57029600-57038200	ZNF genes & repeats	Colon Smooth Muscle	Colon
16	chr19:57029600-57039400	ZNF genes & repeats	Fetal Brain Female	brain
17	chr19:57029600-57041800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
18	chr19:57029600-57046200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
19	chr19:57029800-57038800	ZNF genes & repeats	Brain Anterior Caudate	brain
20	chr19:57030000-57038200	ZNF genes & repeats	Stomach Smooth Muscle	stomach
21	chr19:57030600-57039600	ZNF genes & repeats	Brain Germinal Matrix	brain
22	chr19:57030800-57039200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
23	chr19:57031200-57041000	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
24	chr19:57031800-57038800	ZNF genes & repeats	Right Ventricle	heart
25	chr19:57033000-57039600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
26	chr19:57033400-57038000	ZNF genes & repeats	Psoas Muscle	Psoas
27	chr19:57033800-57038400	ZNF genes & repeats	Fetal Muscle Trunk	muscle
28	chr19:57034600-57038000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
29	chr19:57034800-57039400	ZNF genes & repeats	Brain Angular Gyrus	brain
30	chr19:57035200-57038000	ZNF genes & repeats	Fetal Lung	lung
31	chr19:57035200-57038200	ZNF genes & repeats	Gastric	stomach
32	chr19:57035200-57039200	ZNF genes & repeats	Rectal Smooth Muscle	rectum
33	chr19:57035600-57038200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr19:57036200-57037800	ZNF genes & repeats	Primary T cells from cord blood	blood
35	chr19:57036200-57038200	ZNF genes & repeats	HSMMtube	muscle
36	chr19:57036200-57038600	ZNF genes & repeats	Colonic Mucosa	Colon
37	chr19:57036400-57037800	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
38	chr19:57036400-57038200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
39	chr19:57036400-57038400	ZNF genes & repeats	Aorta	Aorta
40	chr19:57037000-57038400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr19:57037200-57038000	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr19:57037400-57038400	ZNF genes & repeats	Fetal Stomach	stomach
43	chr19:57037600-57038400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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