Variant report

Variant	rs73055321
Chromosome Location	chr19:57058146-57058147
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF667-2	chr19:57056935-57058640	ENSG00000245443
2	lnc-ZNF667-2	chr19:57056297-57058640	NONHSAT068173
3	lnc-ZNF667-2	chr19:57056935-57058640	ENSG00000269696.1

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10403034	0.84[EUR][1000 genomes]
rs10405130	0.82[EUR][1000 genomes]
rs10405534	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10407163	0.84[EUR][1000 genomes]
rs10408508	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10413931	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10415931	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10417351	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10418635	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10422564	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10423617	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13346710	0.83[EUR][1000 genomes]
rs17207495	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2058131	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2286420	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34136271	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3752177	0.84[EUR][1000 genomes]
rs73055319	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73068034	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73068037	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73068061	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73070034	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73070060	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73070074	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73070077	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73070080	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949121	chr19:56754719-57591038	ZNF genes & repeats Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv1062341	chr19:56794070-57273332	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
3	nsv544094	chr19:56794070-57273332	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
4	nsv1056713	chr19:56799151-57265682	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
5	nsv544095	chr19:56799151-57265682	Strong transcription ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
6	nsv580385	chr19:56918598-57072433	ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
7	nsv1057240	chr19:56919831-57153659	Flanking Active TSS Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
8	nsv544097	chr19:56919831-57153659	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
9	nsv580386	chr19:56924761-57072433	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
10	nsv1055357	chr19:56933632-57190007	ZNF genes & repeats Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
11	nsv912518	chr19:56995737-57109821	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
12	nsv912519	chr19:57020754-57065189	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
13	nsv1062806	chr19:57050734-57191914	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:57047400-57077800	ZNF genes & repeats	Liver	Liver
2	chr19:57050600-57059400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr19:57050600-57062800	ZNF genes & repeats	A549	lung
4	chr19:57050800-57063000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
5	chr19:57050800-57067000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr19:57051000-57060800	ZNF genes & repeats	Primary B cells from cord blood	blood
7	chr19:57051200-57062600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
8	chr19:57051200-57068000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
9	chr19:57051400-57058400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr19:57051400-57063000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr19:57051400-57068000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr19:57051400-57068000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr19:57051400-57068000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr19:57051400-57068000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr19:57051400-57070600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr19:57051600-57059000	ZNF genes & repeats	Brain Germinal Matrix	brain
17	chr19:57051600-57060600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr19:57051600-57061200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr19:57051600-57067200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
20	chr19:57051600-57078000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
21	chr19:57051800-57066600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
22	chr19:57051800-57067000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
23	chr19:57052200-57063000	ZNF genes & repeats	Fetal Brain Female	brain
24	chr19:57052200-57070200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
25	chr19:57052400-57062600	ZNF genes & repeats	Ovary	ovary
26	chr19:57052400-57068000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr19:57052600-57062800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
28	chr19:57052600-57063000	ZNF genes & repeats	Fetal Muscle Leg	muscle
29	chr19:57052600-57067800	ZNF genes & repeats	Dnd41	blood
30	chr19:57052800-57058400	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr19:57053200-57058600	Weak transcription	Right Ventricle	heart
32	chr19:57053800-57063000	ZNF genes & repeats	Fetal Lung	lung
33	chr19:57054000-57058200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr19:57054000-57068000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr19:57054800-57062400	ZNF genes & repeats	Aorta	Aorta
36	chr19:57054800-57077800	ZNF genes & repeats	Adipose Nuclei	Adipose
37	chr19:57055000-57058600	ZNF genes & repeats	Stomach Smooth Muscle	stomach
38	chr19:57055000-57067200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
39	chr19:57055000-57070800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr19:57055200-57063000	ZNF genes & repeats	Brain Hippocampus Middle	brain
41	chr19:57055200-57063000	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
42	chr19:57055200-57068000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
43	chr19:57055400-57059000	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
44	chr19:57055400-57059400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr19:57056200-57063000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr19:57056200-57068000	ZNF genes & repeats	Brain Substantia Nigra	brain
47	chr19:57056400-57059400	ZNF genes & repeats	Left Ventricle	heart
48	chr19:57056400-57059400	ZNF genes & repeats	Pancreas	Pancrea
49	chr19:57056600-57059000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr19:57056600-57059400	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood

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