Variant report

Variant	rs10443184
Chromosome Location	chr1:94670784-94670785
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94654322..94656006-chr1:94669547..94672112,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1048866	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10782980	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs10874840	0.86[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs11165090	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11196	0.92[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1411698	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1411700	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1411701	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1929130	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2781572	0.83[GIH][hapmap]
rs35791244	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs3789687	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs3814020	0.83[EUR][1000 genomes]
rs4847294	0.83[GIH][hapmap];0.82[TSI][hapmap]
rs6541340	0.84[ASW][hapmap];0.92[CEU][hapmap];0.85[GIH][hapmap];0.96[LWK][hapmap];0.94[MKK][hapmap];0.94[TSI][hapmap];0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6541411	0.87[EUR][1000 genomes]
rs6657063	0.83[GIH][hapmap];0.82[TSI][hapmap]
rs6674226	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6691702	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7536759	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7551045	0.83[GIH][hapmap]
rs951534	0.83[GIH][hapmap]

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94634200-94675200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr1:94636200-94673400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr1:94640000-94684800	Weak transcription	Spleen	Spleen
4	chr1:94642400-94684600	Weak transcription	Fetal Stomach	stomach
5	chr1:94644800-94684400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:94645000-94687600	Weak transcription	Pancreas	Pancrea
7	chr1:94647200-94675800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr1:94647800-94676200	Weak transcription	Small Intestine	intestine
9	chr1:94649400-94684000	Weak transcription	Right Ventricle	heart
10	chr1:94649600-94680000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr1:94657000-94672000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr1:94660400-94681000	Weak transcription	Fetal Heart	heart
13	chr1:94663200-94672400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:94663200-94673000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr1:94663200-94674600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr1:94663800-94672200	Strong transcription	NH-A	brain
17	chr1:94664800-94671000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr1:94664800-94672400	Strong transcription	Adipose Nuclei	Adipose
19	chr1:94664800-94672800	Strong transcription	HSMM	muscle
20	chr1:94665400-94673400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr1:94665600-94671800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr1:94666200-94672200	Strong transcription	Skeletal Muscle Female	skeletal muscle
23	chr1:94666600-94674600	Strong transcription	NHDF-Ad	bronchial
24	chr1:94666800-94670800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr1:94666800-94671200	Strong transcription	Muscle Satellite Cultured Cells	--
26	chr1:94666800-94671400	Strong transcription	Osteobl	bone
27	chr1:94667000-94670800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr1:94668200-94670800	Strong transcription	Placenta	Placenta
29	chr1:94668200-94673200	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr1:94668400-94671800	Strong transcription	Liver	Liver
31	chr1:94668400-94674400	Strong transcription	NHEK	skin
32	chr1:94668400-94674800	Weak transcription	Aorta	Aorta
33	chr1:94668400-94687000	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr1:94668600-94672200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr1:94668600-94684400	Weak transcription	Psoas Muscle	Psoas
36	chr1:94668800-94673400	Strong transcription	HMEC	breast
37	chr1:94668800-94699000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr1:94669200-94670800	Strong transcription	A549	lung
39	chr1:94669200-94681200	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr1:94669400-94676400	Genic enhancers	HUVEC	blood vessel
41	chr1:94669400-94687600	Weak transcription	Gastric	stomach
42	chr1:94669800-94675400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr1:94670000-94672000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr1:94670000-94673400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr1:94670000-94673400	Weak transcription	Fetal Muscle Trunk	muscle
46	chr1:94670000-94673400	Weak transcription	Left Ventricle	heart
47	chr1:94670000-94673400	Weak transcription	Lung	lung
48	chr1:94670000-94673400	Weak transcription	HSMMtube	muscle
49	chr1:94670000-94684000	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr1:94670200-94672200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links