Variant report

Variant	rs1411698
Chromosome Location	chr1:94686110-94686111
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10443184	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1048866	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10782980	0.84[EUR][1000 genomes]
rs10874840	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11165090	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11196	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1411700	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1411701	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1929130	1.00[CEU][hapmap];0.92[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35791244	0.91[EUR][1000 genomes]
rs3789687	0.80[CEU][hapmap];0.85[EUR][1000 genomes]
rs3814020	0.83[EUR][1000 genomes]
rs6541340	0.87[CEU][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6541411	0.87[EUR][1000 genomes]
rs6674226	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6691702	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7536759	0.90[EUR][1000 genomes]

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94645000-94687600	Weak transcription	Pancreas	Pancrea
2	chr1:94668400-94687000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr1:94668800-94699000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr1:94669400-94687600	Weak transcription	Gastric	stomach
5	chr1:94670800-94686400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr1:94670800-94686400	Weak transcription	Placenta	Placenta
7	chr1:94673800-94698600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr1:94673800-94701000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr1:94674000-94697000	Weak transcription	HSMMtube	muscle
10	chr1:94676200-94687600	Weak transcription	A549	lung
11	chr1:94676400-94691600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr1:94680800-94688200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr1:94681200-94689000	Genic enhancers	HUVEC	blood vessel
14	chr1:94683000-94690000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr1:94683800-94688000	Strong transcription	HMEC	breast
16	chr1:94683800-94688400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr1:94684200-94690000	Strong transcription	NHEK	skin
18	chr1:94684400-94688000	Genic enhancers	NHDF-Ad	bronchial
19	chr1:94684600-94686600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr1:94684600-94687400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr1:94684800-94692800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr1:94684800-94698600	Weak transcription	Left Ventricle	heart
23	chr1:94685000-94686400	Weak transcription	Spleen	Spleen
24	chr1:94685000-94691400	Weak transcription	Fetal Heart	heart
25	chr1:94685000-94691800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr1:94685000-94692000	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr1:94685000-94701000	Weak transcription	Right Ventricle	heart
28	chr1:94685200-94686800	Weak transcription	Lung	lung
29	chr1:94685200-94687800	Weak transcription	Fetal Kidney	kidney
30	chr1:94685200-94690400	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr1:94685200-94691800	Weak transcription	Adipose Nuclei	Adipose
32	chr1:94685200-94696800	Weak transcription	HepG2	liver
33	chr1:94685200-94700600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr1:94685200-94700800	Weak transcription	NHLF	lung
35	chr1:94685200-94701000	Weak transcription	Psoas Muscle	Psoas
36	chr1:94685400-94689200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr1:94685400-94690800	Weak transcription	HSMM	muscle
38	chr1:94685400-94697400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr1:94685600-94696000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr1:94685800-94687600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr1:94685800-94687800	Weak transcription	Liver	Liver
42	chr1:94685800-94693800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr1:94685800-94699400	Weak transcription	Fetal Muscle Leg	muscle
44	chr1:94686000-94686400	Weak transcription	Osteobl	bone
45	chr1:94686000-94687000	Enhancers	Muscle Satellite Cultured Cells	--
46	chr1:94686000-94691600	Weak transcription	NH-A	brain

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